@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo1371: (2016-03-24 )
VAKEYDVVILGGGTGGYVAAIQAAKNGQKVAVVEKGKVGGTCLHRGCIPTKALLRSAEVLQTVKKASEFGISVEGTAGINFLQAQERKQAIVDQLEKGIHQLFKQGKIDLFVGTGTILGPSIFSPTAGTISVEFEDGSENEMLIPKNLIIATGSKPRTLSGLTIDEEHVLSSDGALNLETLPKSIIIVGGGVIGMEWASMMHDFGVEVTVLEYADRILPTEDKEVAKELARLYKKKKLNMHTSAEVQAASYKKTDTGVEIKAIIKGEEQTFTADKILVSVGRSANTENIGLQNTDIATENGFIQVNDFYQTKESHIYAIGDCIPTIQLAHVAMEEGTIAANYIAGKAAEKLDYDLVPRCIYTSTEIASVGITEEQAKERGHEVKKGKFFFRGIGKALVYGESDGFIKIIADKKTDDILGVSMIGPHVTDMISEAALAQVLNATPWEVGNTIHPHPTLSESFREAALAVDGNAIHG

Atome Classification :

(43 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

FAD_A_7(2YQU)
?
[Raw transfer]




FAD_B_6(2EQ7)
?
[Raw transfer]




FAD_A_7(2YQU)
?
[Raw transfer]




FAD_A_3(3URH)
?
[Raw transfer]




FAD_A_3(3URH)
?
[Raw transfer]




FAD_A_4(2EQ7)
?
[Raw transfer]




FAD_B_8(2YQU)
?
[Raw transfer]




FAD_C_3(1BHY)
?
[Raw transfer]




FAD_B_5(1EBD)
DLDH1_GEOSE
[Raw transfer]




FAD_A_3(2A8X)
DLDH_MYCTU
[Raw transfer]




FAD_A_3(2QAE)
DLDH_TRYCR
[Raw transfer]




FAD_A_3(1LPF)
DLDH_PSEFL
[Raw transfer]




FAD_B_4(1LPF)
DLDH_PSEFL
[Raw transfer]




FAD_C_3(1OJT)
?
[Raw transfer]




FAD_A_3(3LAD)
DLDH_AZOVI
[Raw transfer]




FAD_B_4(3LAD)
DLDH_AZOVI
[Raw transfer]




FAD_B_4(2EQ6)
?
[Raw transfer]




FAD_A_4(1V59)
DLDH_YEAST
[Raw transfer]




FAD_A_4(1V59)
DLDH_YEAST
[Raw transfer]




FAD_A_3(2EQ6)
?
[Raw transfer]




FAD_C_3(1JEH)
DLDH_YEAST
[Raw transfer]




FAD_D_4(1JEH)
DLDH_YEAST
[Raw transfer]




FAD_B_5(1V59)
DLDH_YEAST
[Raw transfer]




FAD_A_3(2EQ6)
?
[Raw transfer]




FAD_A_4(1EBD)
DLDH1_GEOSE
[Raw transfer]




FAD_C_3(1LVL)
DLDH1_PSEPU
[Raw transfer]




FAD_A_3(4JDR)
DLDH_ECOLI
[Raw transfer]




FAD_B_11(4JDR)
DLDH_ECOLI
[Raw transfer]




FAD_B_5(3II4)
DLDH_MYCTU
[Raw transfer]




FAD_A_3(3LAD)
DLDH_AZOVI
[Raw transfer]




FAD_A_3(3II4)
DLDH_MYCTU
[Raw transfer]




FAD_B_4(2QAE)
DLDH_TRYCR
[Raw transfer]




FAD_A_3(2QAE)
DLDH_TRYCR
[Raw transfer]




3II_B_6(3II4)
DLDH_MYCTU
[Raw transfer]




107 HHSearch 94.3342% -94 - C2 -2EQ6 13.4 ?
115 HHSearch 93.6140% -97 - C2 -1EBD 12.6 DLDH1_GEOSE
104 HHSearch 93.4341% -92 - C2 -3URH 12.6 ?
39 PsiBlast_CBE 93.1838% -92 - C2 -1EBD 12.1 DLDH1_GEOSE
15 PsiBlast_PDB 92.3240% -91 - C2 -3URH 12.5 ?
9 PsiBlast_PDB 92.0538% -93 - C2 -1EBD - DLDH1_GEOSE -
77 PsiBlast_CBE 91.9638% -90 - C2 -3II4 12.4 DLDH_MYCTU
106 HHSearch 91.7540% -87 - C2 -1V59 12.7 DLDH_YEAST
31 PsiBlast_CBE 91.6441% -88 - C2 -2EQ9 - ? -
45 PsiBlast_CBE 91.5639% -91 - C2 -1ZY8 - DLDH_HUMAN -
75 PsiBlast_CBE 91.5138% -89 - C2 -4M52 - DLDH_MYCTU -
18 PsiBlast_PDB 91.4238% -85 - C2 -4M52 - DLDH_MYCTU -
29 PsiBlast_CBE 91.3041% -88 - C2 -2EQ9 - ? -
7 PsiBlast_PDB 91.0241% -88 - C2 -2EQ9 - ? -
105 HHSearch 90.9138% -88 - C2 -2A8X 12.2 DLDH_MYCTU
42 PsiBlast_CBE 90.9139% -91 - C2 -1ZY8 - DLDH_HUMAN -
76 PsiBlast_CBE 90.8838% -86 - C2 -4M52 - DLDH_MYCTU -
117 HHSearch 90.8742% -91 - C2 -2YQU 12.6 ?
33 PsiBlast_CBE 90.7841% -87 - C2 -2EQ9 - ? -
102 HHSearch 90.6440% -87 - C2 -2QAE 12.2 DLDH_TRYCR
38 PsiBlast_CBE 90.4237% -95 - C2 -3LAD 12.1 DLDH_AZOVI
26 PsiBlast_CBE 90.2439% -87 - C2 -1LPF 11.6 DLDH_PSEFL
5 PsiBlast_PDB 89.6841% -85 - C2 -2EQ6 13.4 ?
37 PsiBlast_CBE 89.6041% -86 - C2 -2EQ6 13.0 ?
4 PsiBlast_PDB 89.5739% -88 - C2 -1LPF 11.8 DLDH_PSEFL
19 PsiBlast_PDB 89.5539% -82 - C2 -1JEH 13.0 DLDH_YEAST
21 PsiBlast_CBE 89.3641% -85 - C2 -2YQU 12.5 ?
2 PsiBlast_PDB 89.3241% -86 - C2 -2YQU 12.6 ?
17 PsiBlast_PDB 89.2938% -85 - C2 -3II4 12.2 DLDH_MYCTU
1 PsiBlast_PDB 89.2241% -85 - C2 -2EQ7 12.9 ?
22 PsiBlast_CBE 89.0841% -84 - C2 -2EQ7 12.7 ?
103 HHSearch 88.6139% -94 - C2 -3LAD 11.7 DLDH_AZOVI
20 PsiBlast_PDB 88.3439% -81 - C2 -1V59 12.7 DLDH_YEAST
78 PsiBlast_CBE 87.9739% -81 - C2 -1V59 12.8 DLDH_YEAST
101 HHSearch 87.8233% -90 - C2 -1LVL 11.4 DLDH1_PSEPU
79 PsiBlast_CBE 87.4239% -82 - C2 -1JEH 13.5 DLDH_YEAST
91 Fugue 86.6839% -99 - C2 -3LAD 11.7 DLDH_AZOVI
73 PsiBlast_CBE 83.2338% -81 - C2 -2QAE 11.0 DLDH_TRYCR
90 PsiBlast_CBE 82.2636% -82 - C2 -1BHY 11.6 ?
87 PsiBlast_CBE 81.9832% -88 - C2 -4JDR 12.5 DLDH_ECOLI
86 PsiBlast_CBE 81.8032% -88 - C2 -4JDR 12.6 DLDH_ECOLI
89 PsiBlast_CBE 81.2236% -81 - C2 -1OJT 11.4 ?
16 PsiBlast_PDB 80.7538% -81 - C2 -2QAE 11.1 DLDH_TRYCR