@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo1376: (2016-03-24 )
MAKQEIGVIGMGVMGRNLALNIESRGHTVSIFNRSTEKTKAVMEENADKKLVPTYSLEEFVESLEVPRRILIMVKAGDATDMMIEAVKPFLNEGDILIDGGNAFFKDTIRRNKELSEEGFNFIGTGVSGGEEGALKGPSIMPGGQRKAYDLVAPILREIAAVADGEPCVTYIGPDGAGHYVKMVHNGIEYGDMQLIAEAYTILKEIGGLSHDELADVFEEWNNGELDSYLIEITKNILKVKDEETGKPIVDVILDKAGQKGTGKWTSQSALDLGVPLSLITESVFARYISALKEERVYASTVLTGPSNYRFEGDKKAFVESVRRALYFSKIASYAQGFAQMRAASEEYNWDLQYGEIAKIFRAGCIIRARFLQKITDAYNQDKNLKNLLLDPYFKDIAHNYQGDLRTVVAEAVKAGIPVPTFTAAISYYDSYRSEVLSANLIQAQRDYFGAHTYERVDKPGVFHTEWPQVED

Atome Classification :

(28 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

6PG_B_4(2ZYA)
6PGD_ECOLI
[Raw transfer]



6PG_A_3(3FWN)
6PGD_ECOLI
[Raw transfer]



6PG_A_3(2W90)
?
[Raw transfer]



6PG_A_3(2W8Z)
?
[Raw transfer]



6PG_A_2(2IYO)
6PGD_LACLM
[Raw transfer]



NBP_A_4(1PGN)
6PGD_SHEEP
[Raw transfer]



NDP_G_7(1PGO)
6PGD_SHEEP
[Raw transfer]



6PG_C_3(1PGP)
6PGD_SHEEP
[Raw transfer]



6PG_B_7(2W8Z)
?
[Raw transfer]



GLO_A_3(2ZYD)
6PGD_ECOLI
[Raw transfer]



MES_A_4(4GWK)
6PGD_HUMAN
[Raw transfer]



MES_A_3(4GWG)
6PGD_HUMAN
[Raw transfer]



ATR_B_4(3FWN)
6PGD_ECOLI
[Raw transfer]



2AM_I_9(1PGQ)
6PGD_SHEEP
[Raw transfer]



FLC_E_5(2P4Q)
6PGD1_YEAST
[Raw transfer]



FLC_E_5(2P4Q)
6PGD1_YEAST
[Raw transfer]



TRS_A_4(2W90)
?
[Raw transfer]
2 PsiBlast_PDB 98.2075% -91 - C1 -3FWN 4.6 6PGD_ECOLI
21 PsiBlast_CBE 97.8475% -90 - C1 -3FWN 6.0 6PGD_ECOLI
3 PsiBlast_PDB 97.7875% -90 - C1 -2ZYA - 6PGD_ECOLI -
4 PsiBlast_PDB 97.7475% -92 - C1 -2ZYD - 6PGD_ECOLI -
50 HHSearch 97.7175% -93 - C1 -2ZYD - 6PGD_ECOLI -
23 PsiBlast_CBE 97.3675% -89 - C1 -2ZYA 3.9 6PGD_ECOLI
1 PsiBlast_PDB 97.2175% -91 - C1 -2ZYG - ? -
25 PsiBlast_CBE 97.0870% -91 - C1 -2W90 2.7 ?
6 PsiBlast_PDB 97.0570% -91 - C1 -2W90 4.4 ?
22 PsiBlast_CBE 96.6075% -88 - C1 -2ZYD 3.2 6PGD_ECOLI
24 PsiBlast_CBE 96.2870% -90 - C1 -2W8Z 2.7 ?
28 PsiBlast_CBE 95.9669% -95 - C1 -2IZ0 - 6PGD_LACLM -
5 PsiBlast_PDB 95.8370% -89 - C1 -2W8Z 3.4 ?
26 PsiBlast_CBE 95.4669% -94 - C1 -2IZ1 - 6PGD_LACLM -
27 PsiBlast_CBE 95.3769% -93 - C1 -2IZ1 - 6PGD_LACLM -
29 PsiBlast_CBE 95.3369% -94 - C1 -2IZ0 - 6PGD_LACLM -
31 PsiBlast_CBE 95.0869% -93 - C1 -2IYP - 6PGD_LACLM -
9 PsiBlast_PDB 95.0769% -90 - C1 -2IZ1 - 6PGD_LACLM -
7 PsiBlast_PDB 95.0569% -90 - C1 -2IYO 3.9 6PGD_LACLM
8 PsiBlast_PDB 95.0369% -91 - C1 -2IZ0 - 6PGD_LACLM -
13 PsiBlast_PDB 91.9455% -90 - C1 -1PGP 3.2 6PGD_SHEEP
17 PsiBlast_PDB 90.8354% -89 - C1 -4GWG 2.8 6PGD_HUMAN
14 PsiBlast_PDB 90.6655% -89 - C1 -1PGQ 4.5 6PGD_SHEEP
11 PsiBlast_PDB 90.4455% -84 - C1 -1PGN 7.9 6PGD_SHEEP
18 PsiBlast_PDB 90.2954% -91 - C1 -4GWK 2.8 6PGD_HUMAN
12 PsiBlast_PDB 90.2755% -87 - C1 -1PGO 7.4 6PGD_SHEEP
49 HHSearch 88.9451% -82 - C1 -2P4Q 3.5 6PGD1_YEAST
19 PsiBlast_PDB 87.8252% -85 - C1 -2P4Q 3.5 6PGD1_YEAST