@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo1378: (2016-03-24 )
MTTSPFSLKSRSLKFKWTFGASAAIFLTFFLFSYAIYQGIGQMLLNEEEPEVKELLLATTSTLTNQDLTDNEEIKYLFNNDKTVNRKLQDQVINLYDKDGHFINKYYFSRSQDITSIDFSQYFVSGTDKFIMNKPTIDGQKMMTAQMPIVADDNTTVIGYAQVVNPLTSYNRMMDRLLVTMILLGAVALFISGMLGYLLAQNFLNPLTRLARTMNDIRKNGFQKRIETKTNSRDEIGELTVVFNDMMTRIETSFEQQKQFVEDASHELRTPVQIMEGHLKLLTRWGKDDPAVLDESLNASLTELERMKKLVQEMLDLSRAEQISQTKELQITDVNATVEQVRRNFEVMYENFTFTLKEDDTDLRALIQHNHLEQILIIIMDNAVKYSGDGTEVDMHVYKEQKQIHIDVRDYGEGISQEEIDKIFNRFYRVDKARSREKGGNGLGLAIAKQLVEGYLGTINAVSEPDKGTTIKITLPYIEPKSK

Atome Classification :

(22 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ANP_A_3(4BIW)
CPXA_ECOLI
[Raw transfer]



ATP_A_4(3SL2)

[Raw transfer]



ATP_A_4(3SL2)

[Raw transfer]



ATP_A_3(4BIV)
CPXA_ECOLI
[Raw transfer]



AN2_B_4(4U7O)
?
[Raw transfer]



ATP_A_3(4CB0)
CPXA_ECOLI
[Raw transfer]



ADP_A_8(4JAV)
?
[Raw transfer]



ADP_B_13(4JAV)
?
[Raw transfer]



ADP_A_3(4JAS)
?
[Raw transfer]



ADP_A_7(3DGE)
?
[Raw transfer]



AN2_A_3(4U7O)
?
[Raw transfer]



ANP_A_3(1ID0)

[Raw transfer]



ADP_A_2(2C2A)
?
[Raw transfer]



ADP_B_8(3DGE)
?
[Raw transfer]



ADP_A_2(4JAU)
?
[Raw transfer]
2 PsiBlast_PDB 88.1135% -85 - C3 -4U7O 8.7 ?
9 PsiBlast_PDB 85.3729% -51 - C3 -4BIV 6.1 CPXA_ECOLI
1 PsiBlast_PDB 84.3735% -85 - C3 -4U7N - ? -
21 PsiBlast_CBE 83.9335% -68 - C3 -4U7O 9.5 ?
10 PsiBlast_PDB 82.9429% -55 - C3 -4CB0 5.9 CPXA_ECOLI
58 Fugue 82.5426% -40 * C4 *4I5S - ? -
36 HHSearch 80.9717% -52 - C3 -2E0A - PDK4_HUMAN -
5 PsiBlast_PDB 79.0428% -41 - C3 -4BIW 7.4 CPXA_ECOLI
17 PsiBlast_PDB 78.8528% -58 - C3 -4Q20 - DIVL_CAUCR -
22 PsiBlast_CBE 78.1132% -62 - C3 -4JAV 7.6 ?
13 PsiBlast_PDB 77.5032% -73 - C3 -2C2A 7.0 ?
15 PsiBlast_PDB 76.8632% -61 - C3 -4JAV 8.8 ?
11 PsiBlast_PDB 76.4732% -59 - C3 -4JAS 9.0 ?
3 PsiBlast_PDB 76.4735% -62 - C3 -4I5S - ? -
14 PsiBlast_PDB 76.1332% -55 - C3 -3DGE 6.8 ?
12 PsiBlast_PDB 75.9732% -70 - C3 -4JAU 6.5 ?
23 PsiBlast_CBE 75.6432% -56 - C3 -3DGE 8.0 ?
8 PsiBlast_PDB 75.3528% -45 - C3 -4BIZ - CPXA_ECOLI -
6 PsiBlast_PDB 74.5928% -54 - C3 -4BIX - CPXA_ECOLI -
7 PsiBlast_PDB 73.5328% -50 - C3 -4BIY - CPXA_ECOLI -
45 HHSearch 69.0242% -78 * C3 *3SL2 7.8
4 PsiBlast_PDB 63.4948% -74 - C3 -3SL2 7.8