@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo1389: (2016-03-24 )
VDFVIEMLGIRKEFSGFVANDNITLQLKQGEIHALLGENGAGKSTLMNVLFGLYEPDGGEIRVRGTKENINSPNKANELGIGMVHQHFMLVDKFTVAENIILGKEPSKLGVIEKKKAIEEIKEISDRYGLRVDPNAIVRDISIGMQQRVEILKTLYRGADILIFDEPTAVLTPQEIKELIQIMRSLIKEGKSIILITHKLKEIMDVCDRVTVIRRGKGMGTVNVPETTPQDLANLMVGREVVFTTEKIDANPGKDVLEVKDLVVKESRGVESVRGLNLTVRAGEIVGIAGVDGNGQSELISAIAGLSKVTSGSILLNGEHIENKKPRKITEAGLGHIPEDRHKHGLVLEMSLGENIALQTYYKKPISSKGFLNHKAMYDFARELIEEYDVRASSEYVAAKSLSGGNQQKAIIAREIHRNPDFLIAAQPTRGLDVGAIEFIHRRLIEQRDNGKAVLLMSFELDEIMNVSDRIAVIYEGKIVAIVDPKETTEQELGLMMAGSSKQEAEMGEKEHV

Atome Classification :

(36 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATP_F_6(2FGK)
HLYBP_ECOLX
[Raw transfer]



ATP_H_8(2FGK)

[Raw transfer]



ATP_E_5(2FGK)
HLYBP_ECOLX
[Raw transfer]



ATP_E_5(2FGJ)
HLYBP_ECOLX
[Raw transfer]



ATP_C_11(1XEF)
HLYBP_ECOLX
[Raw transfer]



128_A_2(2PMK)

[Raw transfer]



ATP_G_7(2FGK)
HLYBP_ECOLX
[Raw transfer]



ADP_B_2(2FF7)

[Raw transfer]



ATP_H_8(2FGJ)

[Raw transfer]



ADP_B_2(2FFA)

[Raw transfer]



ATP_D_12(1XEF)

[Raw transfer]



12D_A_2(3B5J)

[Raw transfer]



ATP_A_9(1XEF)
HLYBP_ECOLX
[Raw transfer]



ATP_B_10(1XEF)
HLYBP_ECOLX
[Raw transfer]



ATP_F_6(2FGJ)
HLYBP_ECOLX
[Raw transfer]



ATP_G_7(2FGJ)
HLYBP_ECOLX
[Raw transfer]
92 HHSearch 70.1218% -79 - C- -2IW3 - EF3A_YEAST -
94 HHSearch 67.1119% -58 - C1 -3OZX - ? -
110 HHSearch 67.0029% -84 * C2 *3TUI - METN_ECOLI -
18 PsiBlast_PDB 65.7729% -86 - C2 -3TUI - METN_ECOLI -
19 PsiBlast_PDB 64.9429% -87 - C2 -3TUZ - METN_ECOLI -
26 PsiBlast_CBE 64.4532% -89 - C2 -2OUK - ? -
84 Fugue 64.1721% -82 - C2 -1OXS - ? -
90 HHSearch 63.2222% -69 - C1 -3BK7 - ? -
5 PsiBlast_PDB 62.5932% -85 - C2 -4YMW - ? -
6 PsiBlast_PDB 62.3232% -88 - C2 -2OLJ - ? -
93 HHSearch 61.6222% -55 - C1 -1YQT - ? -
3 PsiBlast_PDB 61.3432% -86 - C2 -4YMU - ? -
1 PsiBlast_PDB 61.1632% -88 - C2 -4YMS - ? -
22 PsiBlast_CBE 61.1332% -85 - C2 -4YMU - ? -
17 PsiBlast_PDB 60.6930% -86 - C2 -3DHW - METN_ECOLI -
83 Fugue 60.6123% -75 - C2 -1Z47 - ? -
23 PsiBlast_CBE 60.1932% -87 - C2 -3C4J - ? -
28 PsiBlast_CBE 59.8932% -87 - C2 -2OLK - ? -
8 PsiBlast_PDB 59.7332% -91 - C2 -2OUK - ? -
24 PsiBlast_CBE 59.7132% -86 - C2 -2Q0H - ? -
74 PsiBlast_CBE 49.9131% -87 - C2 -1XEF 5.2 HLYBP_ECOLX
68 PsiBlast_CBE 45.7531% -86 - C2 -2FGJ 4.5
70 PsiBlast_CBE 45.6031% -81 - C2 -2FGJ 5.2 HLYBP_ECOLX
71 PsiBlast_CBE 44.4831% -81 - C2 -2FGJ 4.8 HLYBP_ECOLX
61 PsiBlast_CBE 44.1931% -77 - C2 -2PMK 4.7
59 PsiBlast_CBE 43.9631% -76 - C2 -2FF7 4.4
76 PsiBlast_CBE 43.5131% -87 - C2 -1XEF 4.5 HLYBP_ECOLX
75 PsiBlast_CBE 42.9931% -83 - C2 -1XEF 5.1 HLYBP_ECOLX
62 PsiBlast_CBE 42.6831% -75 - C2 -3B5J 4.7
72 PsiBlast_CBE 41.8231% -76 - C2 -2FFA 4.5
64 PsiBlast_CBE 41.6731% -78 - C2 -2FGK 4.9 HLYBP_ECOLX
73 PsiBlast_CBE 41.6031% -81 - C2 -1XEF 4.8
66 PsiBlast_CBE 41.1931% -75 - C2 -2FGK 5.5 HLYBP_ECOLX
69 PsiBlast_CBE 40.4131% -81 - C2 -2FGJ 4.8 HLYBP_ECOLX
63 PsiBlast_CBE 39.9131% -77 - C2 -2FGK 5.3
65 PsiBlast_CBE 39.1931% -73 - C2 -2FGK 5.0 HLYBP_ECOLX