@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo1403: (2016-03-24 )
MTEYTPMIKQYLEIKDKYQDAFLFFRLGDFYEMFFEDALNASQILEITLTGREGGTKEKIPMCGVPYHSASGYIDTLIEKGYKVAICEQVEDPKTTKGMVKREVVQLISPGTVMDERGLKAKENNYIASLYCYEGKEYGFAYSDLSTGELKSTVIEASEDRLINELTTLSTRELIVSSSEKEVLSDVMKEQLGLTFSVHEEDTIPAENEKLVTRHMSLSEKRAIGKLLHYLKETQKRDLGHLQQAVHYETSNYMKMDYYSKRNLELAESIRGKGRQGTLLWLLDNTQTAMGGRMLKQWIDRPLIDRKKIIERQNDVSELMAHFFERLELVENLKNVYDLERLAGRVAYGNVNARDLIQLRNSLYQIPRIRATLLSMSSESLTELAEQLDPCEELTEKLEEAIMDSAPISIREGGIIKDGYNSQLDTYRDASRNGKTWIAELERKERELTGIKTLKVGFNRVFGYYIEVTRANTHLLPEGRYERKQTLTNAERYITPELKEKEKLILDAEEKSMELEYQLFSEVREMVKDYIERLQKLAKSVSEIDCLQSFADISEKNHFIRPTLSEDGSLHVKQGRHPVVEKVMGAQSYVANDCDLDENREILLITGPNMSGKSTYMRQVALTAICAQVGCFVPAEEAILPIFDQIFTRIGAADDLIAGQSTFMVEMLEARNAIVHATKDSLILFDEIGRGTATYDGMALAQAIIEYIHENVHAKTLFSTHYHELTDLEKELRGLQNIHVSAVEENGKVVFLHKIKEGPADKSYGIHVAELAELPKSLIERASRILEQLENDDKKIIIASVKQPEEVHEEVQLSMFPLEPEKKASSKETKLLKEIASMNIMQMTPMDAMNKLYELQSKIH

Atome Classification :

(28 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NACID_F_2(1OH6)
MUTS_ECOLI
[Raw transfer]

-

NACID_F_2(1OH8)
MUTS_ECOLI
[Raw transfer]

-

NACID_F_2(1OH7)
MUTS_ECOLI
[Raw transfer]

-

NACID_F_4(3K0S)
MUTS_ECOLI
[Raw transfer]

-

NACID_F_2(1W7A)
MUTS_ECOLI
[Raw transfer]

-

NACID_C_1(1EWQ)
MUTS_THEAQ
[Raw transfer]

-

NACID_C_1(1FW6)
MUTS_THEAQ
[Raw transfer]

-

NACID_C_1(1EWQ)
MUTS_THEAQ
[Raw transfer]

-

NACID_E_1(1WBB)
MUTS_ECOLI
[Raw transfer]

-

CHAIN_F_4(2WTU)
MUTS_ECOLI
[Raw transfer]

-

NACID_F_4(3K0S)
MUTS_ECOLI
[Raw transfer]

-

NACID_F_2(1OH5)
MUTS_ECOLI
[Raw transfer]

-

NACID_C_1(1NNE)
MUTS_THEAQ
[Raw transfer]

-

NACID_C_1(1NNE)
MUTS_THEAQ
[Raw transfer]

-

NACID_E_1(1WBB)
MUTS_ECOLI
[Raw transfer]

-

NACID_F_4(1E3M)
MUTS_ECOLI
[Raw transfer]

-

NACID_E_1(1WB9)
MUTS_ECOLI
[Raw transfer]

-

NACID_F_6(3ZLJ)
MUTS_ECOLI
[Raw transfer]

-

NACID_F_6(3ZLJ)
MUTS_ECOLI
[Raw transfer]

-

CHAIN_F_4(2WTU)
MUTS_ECOLI
[Raw transfer]

-

NACID_E_1(1WBD)
MUTS_ECOLI
[Raw transfer]

-

NACID_E_1(1WBD)
MUTS_ECOLI
[Raw transfer]

-

NACID_E_1(1WB9)
MUTS_ECOLI
[Raw transfer]

-

NACID_E_1(1WB9)
MUTS_ECOLI
[Raw transfer]

-

NACID_F_2(1OH7)
MUTS_ECOLI
[Raw transfer]

-

NACID_F_2(1OH5)
MUTS_ECOLI
[Raw transfer]

-

NACID_F_2(1OH8)
MUTS_ECOLI
[Raw transfer]

-

NACID_F_2(1OH6)
MUTS_ECOLI
[Raw transfer]

-

8 PsiBlast_PDB 97.7040% -81 - C2 -3K0S 7.5 MUTS_ECOLI
11 PsiBlast_PDB 97.5039% -81 - C2 -1E3M 7.2 MUTS_ECOLI
5 PsiBlast_PDB 97.0640% -81 - C2 -2WTU 6.9 MUTS_ECOLI
9 PsiBlast_PDB 96.9240% -80 - C2 -1WBB 8.5 MUTS_ECOLI
7 PsiBlast_PDB 96.7540% -80 - C2 -1WBD 8.2 MUTS_ECOLI
3 PsiBlast_PDB 96.7040% -78 - C2 -1OH7 7.0 MUTS_ECOLI
10 PsiBlast_PDB 96.6740% -79 - C2 -1WB9 7.4 MUTS_ECOLI
12 PsiBlast_PDB 96.5440% -82 - C2 -1NNE 6.0 MUTS_THEAQ
2 PsiBlast_PDB 96.4740% -77 - C2 -1OH6 5.1 MUTS_ECOLI
28 PsiBlast_CBE 96.0840% -81 - C2 -1WBD 3.4 MUTS_ECOLI
31 PsiBlast_CBE 95.8940% -82 - C2 -1WB9 2.7 MUTS_ECOLI
37 HHSearch 95.8640% -76 - C2 -1WB9 7.3 MUTS_ECOLI
6 PsiBlast_PDB 95.7040% -79 - C2 -3ZLJ 6.2 MUTS_ECOLI
23 PsiBlast_CBE 95.0540% -81 - C2 -1W7A 3.8 MUTS_ECOLI
26 PsiBlast_CBE 94.9740% -83 - C2 -1OH6 3.8 MUTS_ECOLI
1 PsiBlast_PDB 94.7840% -79 - C2 -1OH5 5.3 MUTS_ECOLI
29 PsiBlast_CBE 94.4440% -80 - C2 -3K0S 4.4 MUTS_ECOLI
13 PsiBlast_PDB 94.4340% -79 - C2 -1FW6 6.3 MUTS_THEAQ
4 PsiBlast_PDB 94.4140% -75 - C2 -1OH8 7.8 MUTS_ECOLI
14 PsiBlast_PDB 94.3240% -78 - C2 -1EWQ 6.8 MUTS_THEAQ
25 PsiBlast_CBE 94.2440% -81 - C2 -1OH7 2.0 MUTS_ECOLI
32 PsiBlast_CBE 93.6740% -79 * C2 *1NNE 4.2 MUTS_THEAQ
27 PsiBlast_CBE 93.5840% -82 - C2 -1OH5 4.0 MUTS_ECOLI
24 PsiBlast_CBE 93.5640% -81 - C2 -1OH8 2.1 MUTS_ECOLI
40 HHSearch 93.5141% -75 - C2 -1EWQ 6.8 MUTS_THEAQ
30 PsiBlast_CBE 93.4040% -82 - C2 -1WBB 4.2 MUTS_ECOLI
21 PsiBlast_CBE 91.4340% -77 - C2 -3ZLJ 4.0 MUTS_ECOLI
22 PsiBlast_CBE 89.5940% -77 - C2 -2WTU 3.9 MUTS_ECOLI