Study : Lmo1405 (atomeDB@cbs.cnrs.fr)


Main Binding Site Prediction:


Binding Site Prediction

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Binding Site Number :C4_S1
Best Complexes choosen after comparative docking [pKd > 3] : 3 (5 maxi)

Complexes [Theoretical pKd]FileVolume (A3)
(FPocket)
Hydrophobicity
Score(FPocket)
Contacts Ligand/Receptor [<4A] in Site C4_S1
Complex: CIT_C_7(1VKF) / Model_43(1VKF/C) = [3.8] Download709.6412.47LELPFSGQSIIPAAHNQKDMEKILELGLTYMVMLETHVAQLKSLVKYAQAGGKKVLLHADLVNGLKNDDYAIDFLCTEICPDGIISTRGNAIMKAKQHKMLAIQRLFMIDSSACNKGVALIQKVQPDCIELLPGIIPEQVQKMTQKLHIPVIAGGLIETSEQVNQVIASGAIAVTTSNKHLW
Complex: CIT_D_8(1VKF) / Model_42(1VKF/D) = [3.9] Download534.1417.75LELPFSGQSIIPAAHNQKDMEKILELGLTYMVMLETHVAQLKSLVKYAQAGGKKVLLHADLVNGLKNDDYAIDFLCTEICPDGIISTRGNAIMKAKQHKMLAIQRLFMIDSSACNKGVALIQKVQPDCIELLPGIIPEQVQKMTQKLHIPVIAGGLIETSEQVNQVIASGAIAVTTSNKHLW
Complex: CIT_A_6(1VKF) / Model_22(1VKF/A) = [4.1] Download623.469.15LELPFSGQSIIPAAHNQKDMEKILELGLTYMVMLETHVAQLKSLVKYAQAGGKKVLLHADLVNGLKNDDYAIDFLCTEICPDGIISTRGNAIMKAKQHKMLAIQRLFMIDSSACNKGVALIQKVQPDCIELLPGIIPEQVQKMTQKLHIPVIAGGLIETSEQVNQVIASGAIAVTTSNKHLW
Consensus
[pKd Mean = 3.93]
-622
(s=71)
13
(s=3)
LELPFSGQSIIPAAHNQKDMEKILELGLTYMVMLETHVAQLKSLVKYAQAGGKKVLLHADLVNGLKNDDYAIDFLCTEICPDGIISTRGNAIMKAKQHKMLAIQRLFMIDSSACNKGVALIQKVQPDCIELLPGIIPEQVQKMTQKLHIPVIAGGLIETSEQVNQVIASGAIAVTTSNKHLW