@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo1421: (2016-03-24 )
MIRFDNVSKKYSDDKTAAVNNVTLDIKDGEFFVFIGPSGCGKTTTLKMINRLIPLTTGTIYINEKRISDYDIHELRWDIGYVLQQIALFPHMTIEENIAIVPELKKWSKEKIHDRITELLDSVGLDPESYRHRKPAELSGGEQQRVGVVRALAADPGIILMDEPFSALDPISRQRLQQDISALQKKIKKTIVFVTHDMQEALALGDRICVMQGGEIVQVATPQEIMKNPENDFVKDFLASGHAFNTPILEANFTVNDLIEADLFYSYQTSDGTLGISSTEPVENLVRRIAEEQSIPVTDEAGNYIGTVSNKHVMQFLARHLESSGELV

Atome Classification :

(37 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATP_J_5(4YMU)
?
[Raw transfer]




ATP_A_7(4YMU)
?
[Raw transfer]




ATP_B_5(4QC2)
?
[Raw transfer]




ATP_B_6(3FVQ)
FBPC_NEIG1
[Raw transfer]




ATP_A_5(1B0U)
HISP_SALTY
[Raw transfer]




ATP_A_3(3FVQ)
FBPC_NEIG1
[Raw transfer]




ATP_A_6(4YMV)
?
[Raw transfer]




ATP_A_3(3FVQ)
FBPC_NEIG1
[Raw transfer]




ATP_B_6(1L2T)
Y796_METJA
[Raw transfer]




ATP_J_5(4YMV)
?
[Raw transfer]




ADP_A_3(4P32)
LPTB_ECOLI
[Raw transfer]




ADP_B_5(4P32)
LPTB_ECOLI
[Raw transfer]




ADP_A_5(2OLJ)
?
[Raw transfer]




GOL_B_11(4P33)
LPTB_ECOLI
[Raw transfer]




GOL_A_5(4P33)
LPTB_ECOLI
[Raw transfer]




EDO_A_12(2PCL)
LOLD_AQUAE
[Raw transfer]




IPA_A_6(3TIF)
Y796_METJA
[Raw transfer]




16 PsiBlast_PDB 89.6837%-121 - C1 -3PUV - MALK_ECOLI -
13 PsiBlast_PDB 89.2637%-118 - C1 -3PUY - MALK_ECOLI -
17 PsiBlast_PDB 88.4937%-118 - C1 -3PUW - MALK_ECOLI -
18 PsiBlast_PDB 88.4137%-117 - C1 -3PUX - MALK_ECOLI -
23 PsiBlast_CBE 88.2637%-115 - C1 -4KI0 - ? -
19 PsiBlast_PDB 88.2437%-119 - C1 -3RLF - MALK_ECOLI -
25 PsiBlast_CBE 88.2137%-120 - C1 -3PUZ - MALK_ECOLI -
112 HHSearch 87.9943%-115 - C1 -2IT1 - ? -
22 PsiBlast_CBE 87.8937%-114 - C1 -4KI0 - ? -
34 PsiBlast_CBE 87.6537%-122 - C1 -2AWN - MALK_ECOLI -
6 PsiBlast_PDB 87.2741%-120 - C1 -2D62 - ? -
1 PsiBlast_PDB 87.2441%-116 - C1 -2IT1 - ? -
24 PsiBlast_CBE 86.8937%-116 - C1 -3RLF - MALK_ECOLI -
15 PsiBlast_PDB 86.0737%-116 - C1 -3PV0 - MALK_ECOLI -
14 PsiBlast_PDB 85.8437%-119 - C1 -3PUZ - MALK_ECOLI -
29 PsiBlast_CBE 85.7337%-117 - C1 -3PUV - MALK_ECOLI -
36 PsiBlast_CBE 85.7037%-117 - C1 -1Q12 - MALK_ECOLI -
20 PsiBlast_PDB 85.6437%-114 - C1 -4JBW - MALK_ECOLI -
21 PsiBlast_CBE 85.6041%-121 - C1 -2IT1 - ? -
40 PsiBlast_CBE 85.2936%-115 - C1 -2R6G - MALK_ECOLI (first) -
128 HHSearch 79.9933%-112 - C1 -1B0U 5.8 HISP_SALTY
114 HHSearch 79.2437%-107 - C1 -3FVQ 6.8 FBPC_NEIG1
75 PsiBlast_CBE 78.6036%-114 - C1 -4YMU 5.6 ?
82 PsiBlast_CBE 78.5137%-105 - C1 -3FVQ 7.4 FBPC_NEIG1
83 PsiBlast_CBE 78.1637%-104 - C1 -3FVQ 6.9 FBPC_NEIG1
73 PsiBlast_CBE 76.9536%-112 - C1 -4YMV 5.0 ?
76 PsiBlast_CBE 75.9936%-113 - C1 -4YMU 5.8 ?
74 PsiBlast_CBE 75.7336%-110 - C1 -4YMV 6.1 ?
126 HHSearch 71.0938%-112 * C1 *2OLJ 6.2 ?
78 PsiBlast_CBE 68.8540% -96 - C1 -1L2T 6.7 Y796_METJA
80 PsiBlast_CBE 67.8739%-100 - C1 -3TIF 3.4 Y796_METJA
88 PsiBlast_CBE 60.6833%-105 - C1 -4P32 6.3 LPTB_ECOLI
89 PsiBlast_CBE 60.5433%-107 - C1 -4P32 6.0 LPTB_ECOLI
93 PsiBlast_CBE 59.8532%-103 - C1 -4P33 2.5 LPTB_ECOLI
90 PsiBlast_CBE 58.8833% -99 - C1 -4QC2 7.4 ?
92 PsiBlast_CBE 57.9832% -99 - C1 -4P33 2.6 LPTB_ECOLI
102 PsiBlast_CBE 51.8336% -89 - C1 -2PCL 2.6 LOLD_AQUAE