@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo1428: (2016-03-24 )
VLKFEHVTKTYKGGKKAVNDLTLNIDKGEFVCFIGPSGCGKTTTMKMINRLIEPTEGKIFINDKDIMAEDPVKLRRSIGYVIQQIGLMPHMTIRENIVLVPKLLKWSEEKKQERAKELIKLVDLPEEFLDRYPYELSGGQQQRIGVLRALAAEQNLILMDEPFGALDPITRDSLQEEFKNLQKELGKTIIFVTHDMDEAIKLADRIVIMKDGEIVQFDTPDEILRNPANSFVEDFIGKDRLIEAKPDVTQVAQIMNTNPVSITADKSLQAAITVMKEKRVDTLLVVDEGNVLKGFIDVEQIDLNRRTATSVMDIIEKNVFYVYEDTLLRDTVQRILKRGYKYIPVVDKDKRLVGIVTRASLVDIVYDSIWGTLEDATENQEEQADSKTTEPEMKQEG

Atome Classification :

(36 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ANP_J_5(3C41)
?
[Raw transfer]



ANP_K_6(3C41)
?
[Raw transfer]



ATP_B_5(4QC2)
?
[Raw transfer]



ATP_J_5(4YMU)
?
[Raw transfer]



ATP_A_3(3FVQ)
FBPC_NEIG1
[Raw transfer]



ATP_B_6(3FVQ)
FBPC_NEIG1
[Raw transfer]



ATP_A_3(3FVQ)
FBPC_NEIG1
[Raw transfer]



ATP_A_6(4YMV)
?
[Raw transfer]



ATP_J_5(4YMV)
?
[Raw transfer]



ADP_B_5(4P32)
LPTB_ECOLI
[Raw transfer]



ATP_A_3(4QC2)
?
[Raw transfer]



ATP_A_7(4YMU)
?
[Raw transfer]



ATP_A_3(3VX4)
?
[Raw transfer]



ADP_A_2(4U00)
?
[Raw transfer]



ADP_A_3(4P32)
LPTB_ECOLI
[Raw transfer]



AT4_D_8(2OLK)
?
[Raw transfer]



AT4_B_6(2OLK)
?
[Raw transfer]
25 PsiBlast_CBE 87.8536%-110 - C2 -3PUZ - MALK_ECOLI -
14 PsiBlast_PDB 87.5336%-102 - C2 -3PUV - MALK_ECOLI -
11 PsiBlast_PDB 87.2336%-102 - C2 -3PUY - MALK_ECOLI -
17 PsiBlast_PDB 87.1736%-101 - C2 -3RLF - MALK_ECOLI -
16 PsiBlast_PDB 87.1436% -99 - C2 -3PUX - MALK_ECOLI -
15 PsiBlast_PDB 86.7436%-101 - C2 -3PUW - MALK_ECOLI -
20 PsiBlast_PDB 86.6836% -98 - C2 -4KI0 - ? -
30 PsiBlast_CBE 86.5336%-107 - C2 -2AWN - MALK_ECOLI -
35 PsiBlast_CBE 86.4136% -97 - C2 -2R6G - MALK_ECOLI (first) -
21 PsiBlast_CBE 85.9041%-106 - C2 -2IT1 - ? -
32 PsiBlast_CBE 85.8336% -99 - C2 -1Q12 - MALK_ECOLI -
23 PsiBlast_CBE 85.7536%-101 - C2 -4KI0 - ? -
24 PsiBlast_CBE 85.6336%-102 - C2 -3RLF - MALK_ECOLI -
19 PsiBlast_PDB 85.5036%-104 - C2 -4KHZ - ? -
12 PsiBlast_PDB 85.1336%-104 - C2 -3PUZ - MALK_ECOLI -
18 PsiBlast_PDB 85.1136%-103 - C2 -4JBW - MALK_ECOLI -
126 Fugue 85.0130% -92 - C2 -1Z47 - ? -
52 PsiBlast_CBE 84.5935% -92 - C2 -3FVQ 7.4 FBPC_NEIG1
13 PsiBlast_PDB 84.3736%-101 - C2 -3PV0 - MALK_ECOLI -
6 PsiBlast_PDB 84.2636% -98 - C2 -1Q12 - MALK_ECOLI -
53 PsiBlast_CBE 83.3735% -93 - C2 -3FVQ 6.9 FBPC_NEIG1
50 PsiBlast_CBE 79.1140%-102 - C2 -4YMU 4.9 ?
51 PsiBlast_CBE 76.7640%-102 - C2 -4YMU 4.7 ?
49 PsiBlast_CBE 75.6440% -96 - C2 -4YMV 4.1 ?
48 PsiBlast_CBE 75.6140% -99 - C2 -4YMV 3.6 ?
69 PsiBlast_CBE 73.9437% -87 - C2 -3C41 5.9 ?
108 HHSearch 73.3938% -97 - C2 -3FVQ 6.9 FBPC_NEIG1
79 PsiBlast_CBE 71.6637% -81 - C2 -2OLK 5.3 ?
70 PsiBlast_CBE 71.3737% -82 - C2 -3C41 6.5 ?
66 PsiBlast_CBE 71.0335%-102 - C2 -4U00 6.2 ?
81 PsiBlast_CBE 70.2037% -84 - C2 -2OLK 5.0 ?
95 PsiBlast_CBE 58.5931% -97 - C2 -4P32 5.9 LPTB_ECOLI
96 PsiBlast_CBE 57.8431% -96 - C2 -4QC2 7.8 ?
94 PsiBlast_CBE 57.4131%-100 - C2 -4P32 6.3 LPTB_ECOLI
99 PsiBlast_CBE 56.7534% -75 - C2 -3VX4 6.6 ?
97 PsiBlast_CBE 56.0831% -96 - C2 -4QC2 7.2 ?