@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo1433: (2016-03-24 )
VAKFTYDVVIIGSGASGTTVAFEAQAAGLKVAIVEERNWGGTCVLRGCDPKKVLIGAREARNLSTRLRGKGIKQAATISWTDLMAFKETFVENVPESRLASFQEAGIETFFGAASFQDSHSLQVGDDLIYAEKIVIATGATPSTLKVEGKEYIQTSDDFLSLEKLPDSVVFIGGGYISFEFASIALAAGRDVHIIHHNSEPLKKFDPDFVAALVANIKDEGIHFHFDTDITKIENDGGKLHIKGKDSFSLQTDLIIGATGRMPNIAHLSLENASIDYTKKGIVVNEKLQTPNNPHIYACGDVAATKGAPLTPVVSLEAALVAKNVIGVNEKITYPAIPSVVFTSPKLASIGISTEEAKANPEKYQIKNHDTTSWYTYKRTNEQIALAKIIEDRESGQIKGAHFLSEEADYMINYIAILMKANLTLADLQSVIFAYPSPASDLTALN

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

FAD_A_4(1EBD)
DLDH1_GEOSE
[Raw transfer]




FAD_A_5(3DK9)
GSHR_HUMAN
[Raw transfer]




FAD_A_3(2R9Z)
GASHR_MARGR
[Raw transfer]




FAD_A_5(3O0H)
?
[Raw transfer]




GCG_B_8(4ADW)
?
[Raw transfer]




23 HHSearch 96.5531% -95 - C1 -3O0H 12.3 ?
2 PsiBlast_PDB 93.6631% -89 - C1 -3O0H - ? -
22 HHSearch 92.7429% -86 - C1 -1GES - GSHR_ECOLI -
39 HHSearch 90.1028% -88 - C1 -2YQU - ? -
31 HHSearch 89.7229% -89 - C1 -3URH - ? -
37 HHSearch 87.2727% -85 - C1 -3DK9 13.6 GSHR_HUMAN
26 HHSearch 86.1328% -85 * C1 *2EQ6 - ? -
34 HHSearch 86.1027% -89 - C1 -1EBD 12.4 DLDH1_GEOSE
40 HHSearch 85.6930% -80 - C1 -2R9Z 13.1 GASHR_MARGR
16 PsiBlast_PDB 85.3927% -89 - C1 -2WOW - ? -
8 PsiBlast_PDB 84.9528% -82 - C1 -2W0H - ? -
15 PsiBlast_PDB 84.7727% -89 - C1 -2WOV - ? -
12 PsiBlast_PDB 84.4928% -84 - C1 -2X50 - ? -
9 PsiBlast_PDB 84.4028% -85 - C1 -2YAU - ? -
1 PsiBlast_PDB 84.3230% -82 - C1 -2R9Z - GASHR_MARGR -
14 PsiBlast_PDB 84.2527% -86 - C1 -2WOI - ? -
24 HHSearch 83.9626% -88 - C1 -2QAE - DLDH_TRYCR -
20 PsiBlast_PDB 83.9327% -86 - C1 -2WPE - ? -
11 PsiBlast_PDB 83.5428% -84 - C1 -4APN - ? -
19 PsiBlast_PDB 83.4527% -87 - C1 -2WPC - ? -