@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo1450: (2016-03-24 )
MTKKSRFDQFGFQPFIGLAIDKLGFYEPTEVQQKLIPGILKGESIIGQSQTGTGKTHTFILPIINNVNPEKDAVQAVITAPSRELATQIYNEIRKVTKYSEKEIAVQLVIGGTDKQRAIDKLKKQPQIIVGTPGRINDLIREQALFVHTAKTLVIDEADMTLDMGFLNDVDHIAGKMPANLQMLVFSATIPQKLKPFLSKYMENPRYEHIQPKVAASKTVEHRIMATRSRNKLDLLKNVLVGSQPYLAIVFTNTKTTADEVANGLIERGLKVAKIHGDVNPRERKRTMKQIENLDYQYVVATDLAARGIDIQGISHVVNYELPDDLDFYIHRTGRTGRAGHSGIALTLFEPADEDRLNQLEKMGIEFKHVDWKNKEFVTLEDRNRRAKREAKRETADPREIGMRKKAKQKGKPNYKKKINYKMNEIKRRERRKKR

Atome Classification :

(34 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

8OD_C_11(3NBF)
?
[Raw transfer]




8OD_A_6(3NBF)
?
[Raw transfer]




8OD_D_13(3NBF)
?
[Raw transfer]




8OD_B_8(3NBF)
?
[Raw transfer]




NACID_D_2(4D26)
?
[Raw transfer]

-

NACID_D_2(4D25)
?
[Raw transfer]

-

TLA_B_4(1VEC)
DDX6_HUMAN
[Raw transfer]




GOL_B_10(2GXS)
?
[Raw transfer]




NACID_E_4(2J0S)
IF4A3_HUMAN
[Raw transfer]

-

NACID_H_4(2DB3)
VASA1_DROME
[Raw transfer]

-

NACID_H_2(2J0Q)
IF4A3_HUMAN
[Raw transfer]

-

GOL_D_5(4D25)
?
[Raw transfer]




NACID_E_1(2DB3)
VASA1_DROME
[Raw transfer]

-

NACID_E_1(2DB3)
VASA1_DROME
[Raw transfer]

-

NACID_E_1(2J0Q)
IF4A3_HUMAN
[Raw transfer]

-

CHAIN_E_4(2XB2)
IF4A3_HUMAN
[Raw transfer]

-

NACID_F_9(3EX7)
IF4A3_HUMAN
[Raw transfer]

-

NACID_F_1(2HYI)
IF4A3_HUMAN
[Raw transfer]

-

NACID_G_3(2DB3)
VASA1_DROME
[Raw transfer]

-

NACID_L_2(2HYI)
IF4A3_HUMAN
[Raw transfer]

-

NACID_F_2(2DB3)
VASA1_DROME
[Raw transfer]

-

NACID_J_10(3EX7)
IF4A3_HUMAN
[Raw transfer]

-

IPA_E_5(1XTI)
DX39B_HUMAN
[Raw transfer]




IPA_D_4(1XTI)
DX39B_HUMAN
[Raw transfer]




28 PsiBlast_CBE 91.8935%-100 - C3 -4KBG - ? -
13 PsiBlast_PDB 91.4835% -98 - C3 -4KBF - ? -
29 PsiBlast_CBE 90.9935%-107 - C3 -4KBF - ? -
11 PsiBlast_PDB 88.4933%-108 - C3 -1HV8 - H669_METJA -
18 PsiBlast_PDB 88.3429%-100 - C3 -4CT4 - DDX6_HUMAN -
4 PsiBlast_PDB 88.2132% -96 - C3 -2J0S 11.2 IF4A3_HUMAN
6 PsiBlast_PDB 87.9132% -94 - C3 -3EX7 12.2 IF4A3_HUMAN
5 PsiBlast_PDB 87.7432% -95 - C3 -2HYI 10.0 IF4A3_HUMAN
15 PsiBlast_PDB 87.7030%-104 - C3 -1S2M - DHH1_YEAST -
110 HHSearch 87.5030%-102 - C3 -1S2M - DHH1_YEAST -
32 PsiBlast_CBE 87.4532%-101 - C3 -3PEW - DBP5_YEAST -
2 PsiBlast_PDB 87.0732% -91 - C3 -2XB2 9.0 IF4A3_HUMAN
24 PsiBlast_CBE 87.0532% -93 - C3 -2HYI 10.4 IF4A3_HUMAN
33 PsiBlast_CBE 87.0432%-103 - C3 -3PEY - DBP5_YEAST -
23 PsiBlast_CBE 87.0432% -96 - C3 -3EX7 9.3 IF4A3_HUMAN
17 PsiBlast_PDB 86.9930%-103 - C3 -4BRW - DHH1_YEAST -
22 PsiBlast_CBE 86.6032% -92 - C3 -2J0Q 9.0 IF4A3_HUMAN
30 PsiBlast_CBE 86.4032%-104 - C3 -3RRN - DBP5_YEAST -
3 PsiBlast_PDB 86.3232% -91 - C3 -2J0Q 9.1 IF4A3_HUMAN
16 PsiBlast_PDB 86.1030% -97 - C3 -4BRU - DHH1_YEAST -
112 HHSearch 85.0933% -90 - C3 -2DB3 10.2 VASA1_DROME
12 PsiBlast_PDB 84.3434% -88 - C3 -2DB3 10.2 VASA1_DROME
26 PsiBlast_CBE 84.3134% -89 - C3 -2DB3 9.5 VASA1_DROME
25 PsiBlast_CBE 83.6034% -89 - C3 -2DB3 9.7 VASA1_DROME
27 PsiBlast_CBE 83.4334% -88 - C3 -2DB3 9.5 VASA1_DROME
36 PsiBlast_CBE 81.8631% -96 - C3 -1XTI 3.7 DX39B_HUMAN
10 PsiBlast_PDB 80.8034% -75 - C3 -4D26 12.0 ?
9 PsiBlast_PDB 80.2134% -77 - C3 -4D25 12.2 ?
54 PsiBlast_CBE 68.9735%-112 - C3 -3NBF 5.1 ?
52 PsiBlast_CBE 66.9435%-116 - C3 -3NBF 5.4 ?
53 PsiBlast_CBE 65.7935%-109 - C3 -3NBF 5.8 ?
51 PsiBlast_CBE 65.6835%-119 - C3 -3NBF 5.6 ?
48 PsiBlast_CBE 65.5435%-113 - C3 -2GXS 2.4 ?
61 PsiBlast_CBE 63.9531%-108 - C3 -1VEC 2.0 DDX6_HUMAN