@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo1455: (2016-03-25 )
MARIPEEVIDQVRNQADIVDIIGNYVQLKKQGRNYSGLCPFHGEKTPSFSVSPEKQIFHCFGCGKGGNVFSFLMEHDGLTFVESVKKVADMSHLDVAIELPEERDTSNLPKETSETAKMVEMHQLTAKLYHYILMETEEGTAALTYLKERGMSEQMMTTFQIGFAPNHHATITSFLEKRGMDLQLAGAAGLLSERDDGQMVDRFRNRIMFPITNDRGQIIAFSGRLFDRDDGPKYLNSPETPVFNKRRILFHFSEARQAIRKQEEITLMEGFMDVISAEEAGVQNAVASMGTSLTEEHADLIKRLTNRAIICYDGDRAGIEAAYKAGTLLVERNRLDVFVLQLPAGKDPDDFIRASGPEKFKEVYKQQRMTWTAFKIHYLRKERNLQNETEQIGYIDDCLREIAKLDQAVERELYLKQLADEFELTIETLKQQLQQSLKNSQKSRQMASYNEPPIDDSFMGMMPQEGAEMLFSFEQPAQKLSAHTISEQQLMKAMMESRDNFLLIKQLLGDTTFYHDNYEALYTYLIGYFAEGNDADPTKFMDSVPDAAMKGLISSLEMVISPDEQGKPQFEDYIRSLKRYKLEQKKKELEQELATYNRENDNENEIRVMLEIVQLNRQLNSGQLD

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

GTP_A_5(4EDK)
DNAG_STAAU
[Raw transfer]




GTP_A_5(4EDK)
DNAG_STAAU
[Raw transfer]




CTP_A_2(4EE1)
DNAG_STAAU
[Raw transfer]




ATP_A_4(4EDG)
DNAG_STAAU
[Raw transfer]




UTP_A_5(4EDR)
DNAG_STAAU
[Raw transfer]




0O2_A_3(4EDV)
DNAG_STAAU
[Raw transfer]




G4P_A_3(4EDT)
DNAG_STAAU
[Raw transfer]




NACID_C_1(3B39)
DNAG_ECOLI
[Raw transfer]

-

BEN_A_4(4EDR)
DNAG_STAAU
[Raw transfer]




NACID_D_2(3B39)
DNAG_ECOLI
[Raw transfer]

-

BEN_A_4(4EDK)
DNAG_STAAU
[Raw transfer]




23 HHSearch 94.6231% -90 * C1 *2AU3 - DNAG_AQUAE -
8 PsiBlast_PDB 92.4533% -76 - C1 -2AU3 - DNAG_AQUAE -
48 Fugue 92.3940% -92 - C1 -4EDK 6.9 DNAG_STAAU
1 PsiBlast_PDB 92.3241% -98 - C1 -4E2K - DNAG_STAAU -
7 PsiBlast_PDB 92.1641% -97 - C1 -4EE1 6.2 DNAG_STAAU
5 PsiBlast_PDB 92.0741% -96 - C1 -4EDT 4.7 DNAG_STAAU
2 PsiBlast_PDB 92.0741% -97 - C1 -4EDG 6.7 DNAG_STAAU
4 PsiBlast_PDB 92.0641% -95 - C1 -4EDR 6.9 DNAG_STAAU
3 PsiBlast_PDB 92.0441% -96 - C1 -4EDK 6.9 DNAG_STAAU
6 PsiBlast_PDB 91.6641% -95 - C1 -4EDV 4.6 DNAG_STAAU
24 HHSearch 81.3033% -84 - C1 -1DD9 - DNAG_ECOLI -
47 Fugue 80.8432% -78 - C1 -1DD9 - DNAG_ECOLI -
9 PsiBlast_PDB 73.3340% -70 - C1 -1DD9 - DNAG_ECOLI -
21 PsiBlast_CBE 72.8140% -72 - C1 -3B39 4.7 DNAG_ECOLI
10 PsiBlast_PDB 71.4440% -69 - C1 -1DDE - DNAG_ECOLI -
11 PsiBlast_PDB 70.7640% -68 - C1 -3B39 5.4 DNAG_ECOLI
22 PsiBlast_CBE 58.7467% -83 - C1 -1D0Q - DNAG_GEOSE -
26 HHSearch 58.3366% -84 - C1 -1D0Q - DNAG_GEOSE -
49 Fugue 56.9563% -74 - C1 -1D0Q - DNAG_GEOSE -
13 PsiBlast_PDB 56.8767% -81 - C1 -1D0Q - DNAG_GEOSE -