@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo1462: (2016-03-25 )
MSEPFKSGFVAIVGRPNVGKSTLLNHIIGQKIAIMSDKAQTTRNKVQGVYTTDESQIIFIDTPGIHKPKHKLGDFMVKIALNTFQEVDLIYFVIDASTGFGRGDEFIIEKLKNVQTPVFLLINKIDLIAPEDLFKLIEQYRDLMDFDEIIPISALQGNNVPNLLEQTNANLEIGPMYYPKDQITDHPERFIISELIREQVLQLTREEVPHSVAVVIEGIEKNPKTEKLTINATIIVERSTQKGIIIGKQGQMLKQIGMRARKEIERLLGSKVFLEIWVKVQKNWRDKEHYLQDYGFDREEY

Atome Classification :

(26 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

GDP_B_10(3IEU)
ERA_ECOLI
[Raw transfer]




GDP_A_3(3IEU)
ERA_ECOLI
[Raw transfer]




GNP_A_5(3R9X)
ERA_AQUAE
[Raw transfer]




GNP_A_4(3R9W)
ERA_AQUAE
[Raw transfer]




GNP_A_4(3IEV)
ERA_AQUAE
[Raw transfer]




GNP_A_4(3IEV)
ERA_AQUAE
[Raw transfer]




GNP_A_3(1WF3)
ERA_THET8
[Raw transfer]




GNP_A_3(1WF3)
ERA_THET8
[Raw transfer]




GDP_A_4(2HJG)
DER_BACSU
[Raw transfer]




GDP_A_2(3GEH)
MNME_NOSS1
[Raw transfer]




GDP_B_8(4KYU)
DER_BACSU
[Raw transfer]




GDP_A_3(4KYU)
DER_BACSU
[Raw transfer]




GDP_A_3(4DCU)
DER_BACSU
[Raw transfer]




GDP_A_2(3GEH)
MNME_NOSS1
[Raw transfer]




63 HHSearch 96.0648%-119 - C2 -3IEV 10.6 ERA_AQUAE
2 PsiBlast_PDB 95.5247%-126 - C2 -3R9W 10.3 ERA_AQUAE
1 PsiBlast_PDB 95.0747%-123 - C2 -3IEV 10.5 ERA_AQUAE
3 PsiBlast_PDB 94.4847%-120 - C2 -3R9X 10.1 ERA_AQUAE
22 PsiBlast_CBE 88.2640%-121 - C2 -1EGA - ERA_ECOLI -
6 PsiBlast_PDB 88.2140%-121 - C2 -3IEU 7.4 ERA_ECOLI
21 PsiBlast_CBE 87.9040%-121 - C2 -3IEU 7.4 ERA_ECOLI
62 HHSearch 87.3638%-101 - C2 -1WF3 10.1 ERA_THET8
8 PsiBlast_PDB 86.8238%-108 - C2 -1WF3 10.2 ERA_THET8
4 PsiBlast_PDB 86.0840%-118 - C2 -1EGA - ERA_ECOLI -
61 HHSearch 85.2639%-114 - C2 -1EGA - ERA_ECOLI -
51 Fugue 66.3538%-106 - C2 -1EGA - ERA_ECOLI -
53 Fugue 58.8423% -91 - C2 -1XZP - MNME_THEMA -
20 PsiBlast_PDB 58.7328%-119 - C2 -3PQC - ENGB_THEMA -
11 PsiBlast_PDB 58.5332% -99 - C2 -1MKY - DER_THEMA -
14 PsiBlast_PDB 58.1534%-142 - C2 -4DCV - DER_BACSU -
66 HHSearch 58.0027%-118 - C2 -1MKY - DER_THEMA -
75 HHSearch 57.7128% -96 - C2 -2DYK - ? -
19 PsiBlast_PDB 57.4528%-101 - C2 -2DYK - ? -
76 HHSearch 57.2627% -95 - C2 -3PQC - ENGB_THEMA -
23 PsiBlast_CBE 57.0834%-138 - C2 -4KYU 7.1 DER_BACSU
13 PsiBlast_PDB 56.6634%-141 - C2 -4DCU 7.0 DER_BACSU
15 PsiBlast_PDB 56.2434%-145 - C2 -2HJG 6.7 DER_BACSU
70 HHSearch 55.2130%-115 - C2 -3GEH 7.1 MNME_NOSS1
16 PsiBlast_PDB 55.1334%-113 - C2 -4KYU 5.9 DER_BACSU
10 PsiBlast_PDB 51.8037%-126 - C2 -3GEH 5.8 MNME_NOSS1