@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo1483: (2016-03-25 )
VQRIAWDQFFMAQSHLISSRSTCTRLMVGATIVRDKRIIAGGYNGSIAGGDHCAEHGCYVVDGHCIRTIHAEMNAILQCAKFGATTDKAELYVTHFPCLACTKSIIQAGIKKVYFAKDYKNHPYALELFNIAGVELQKVEFDESVLQVNNWNGEKMHTLVKEAAVEVNIDPEKAEQLYQSISEKLN

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

DDN_A_14(2HVW)
?
[Raw transfer]




DDN_A_14(2HVW)
?
[Raw transfer]




DDN_A_14(2HVW)
?
[Raw transfer]




DDN_B_17(2HVW)
?
[Raw transfer]




TMP_B_14(4P9D)
?
[Raw transfer]




DDN_C_20(2HVW)
?
[Raw transfer]




TMP_D_24(4P9D)
?
[Raw transfer]




TMP_C_20(4P9D)
?
[Raw transfer]




TMP_A_10(4P9D)
?
[Raw transfer]




62 HHSearch 92.0450%-118 - C5 -2HVW 7.7 ?
82 Fugue 88.0548%-116 - C5 -2HVW 7.7 ?
2 PsiBlast_PDB 87.9152%-122 - C5 -2HVW 7.7 ?
22 PsiBlast_CBE 86.6352%-121 - C5 -2HVW 8.0 ?
21 PsiBlast_CBE 85.4752%-120 - C5 -2HVW 8.2 ?
23 PsiBlast_CBE 84.4852%-124 - C5 -2HVV - ? -
4 PsiBlast_PDB 82.3137%-131 - C5 -4P9D 5.7 ?
1 PsiBlast_PDB 81.5952%-117 - C5 -2HVV - ? -
30 PsiBlast_CBE 81.3237%-135 - C5 -4P9C - ? -
64 HHSearch 80.9636%-110 - C5 -1VQ2 - DCTD_BPT4 -
26 PsiBlast_CBE 80.9137%-133 - C5 -4P9D 4.9 ?
6 PsiBlast_PDB 80.7332%-112 - C5 -1VQ2 - DCTD_BPT4 -
28 PsiBlast_CBE 79.6237%-127 - C5 -4P9D 5.4 ?
34 PsiBlast_CBE 79.2037%-129 - C5 -4P9C - ? -
63 HHSearch 79.0833%-122 - C5 -2W4L - DCTD_HUMAN -
38 PsiBlast_CBE 79.0337%-127 - C5 -4P9C - ? -
36 PsiBlast_CBE 78.7137%-129 - C5 -4P9C - ? -
27 PsiBlast_CBE 77.6837%-131 - C5 -4P9D 5.4 ?
25 PsiBlast_CBE 77.5437%-131 - C5 -4P9D - ? -
3 PsiBlast_PDB 77.3037%-125 - C5 -4P9C - ? -