@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo1487: (2016-03-25 )
MERNEVLKKVEAAMPNARFKHTLGVEKAAVELAEHYHMDVEKARITALLHDYAKYYDDDKARKIIEDEGYDPRLLSFHHSLWHAPVGAYLAEKEFGITDTEILEAIRLHTTGSATMSDFDKLIYLADYTEQGRTFPGVYKARRLALKSLDEAMLFALSNTITHLVKKQQLVFPDTLDAYNYFVNLNLEGDY

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

GDP_A_10(2OGI)
?
[Raw transfer]




GDP_A_10(2OGI)
?
[Raw transfer]




UNL_A_9(2O08)
?
[Raw transfer]




UNL_A_9(2O08)
?
[Raw transfer]




103 HHSearch 94.9842%-104 * C9 *2O08 3.4 ?
1 PsiBlast_PDB 93.2743% -94 - C9 -2OGI 6.1 ?
2 PsiBlast_PDB 93.0242% -94 - C9 -2O08 3.4 ?
104 HHSearch 92.9645% -95 - C9 -2OGI 6.1 ?
102 HHSearch 88.7138% -92 - C9 -3CCG - ? -
3 PsiBlast_PDB 83.4540% -81 - C9 -3CCG - ? -
120 HHSearch 56.5132% -71 - C9 -2PQ7 - ? -
127 Fugue 51.5417% -52 - C8 -4S1B - ? -
107 HHSearch 51.2320% -71 - C9 -3HC1 - ? -
106 HHSearch 51.1217% -78 - C9 -3M1T - ? -
116 HHSearch 47.5816% -81 - C9 -3B57 - ? -
109 HHSearch 45.0816% -61 - C9 -3MEM - ? -
122 HHSearch 44.8314% -70 - C9 -2QGS - ? -
111 HHSearch 44.2419% -56 - C9 -2DQB - ? -
117 HHSearch 42.8716% -54 - C9 -2PJQ - ? -
123 HHSearch 42.3815% -62 - C9 -3RF0 - ? -
110 HHSearch 41.0315% -69 - C9 -3LJX - ? -
129 Fugue 39.9712% -56 - C2 -1YAR - ? -
105 HHSearch 39.4716% -50 - C9 -3TM8 - ? -
5 PsiBlast_PDB 39.1634% -50 - C5 -2PQ7 - ? -