@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo1504: (2016-03-25 )
MKQLSSAEVRQLFLDFFKEKGHTIEPSAPLVPNNDPTILWINSGVATMKKYFDGSVIPDNPRMANAQKSIRTNDIENVGKTARHHTFFEMLGNFSIGDYFKEGAIVFAWEFLTSPKWIGFDPDKLYVTVYPEDEEAKTLWREKIGLSDDHIVEIEDNFWDIGIGPSGPDSEIFYDRGPAFGDDASDPELYPGGENERYLEIWNLVFSQFNHNPDGTYTPLPKQNIDTGMGLERMVSIIQDAPTNFETDLFMPIIREVEQIAGVKYGHSQENDVAFKVIADHIRTVAFAIGDGALPSNEGRGYILRRLLRRAVRYAKVLTINEPFMYKLVPVVGKIMNSFYPEVENQTDFIQKVIRTEEERFHETLNEGLAILETILKTAKETNEQVIKGADIFKLYDTFGFPVELTEEYAEDHGLKVDHAGFEAEMKEQRARARAARADVKSMQVQGELLANLTEKSAFVGYNSTEHVSEILYLIQNDTLVDEVAAGNEAQVIFKETPFYAESGGQVADKGTIESETGLAYVEDVQKAPNKQNLHRISVKEGVLKTGDTVKLAVDKVKRRETIKNHTATHLLHRALKDTLGEHVNQAGSLVSPDRLRFDFSHFGQITEEELTKMEEIVNEKIWEQINVVIEEMPIAEAKELGAMALFGEKYGDIVRVVQVGKYSIELCGGVHVRNTADIGLFKIVSETGIGAGTRRIEAVTGKEAYRFVTEQENTLKQAASLLKTTTKETPQKVELLQADLREVKRENESLLSKLASAASADIFESPEEIGGVKVIAKQVNAKDMNQLRQFVDNWKDKKIGGILVLGAVQGDKVNLISAVSEEAIKAGYHAGKLLKEVATRCGGNGGGRPDMAQAGGKNPAELGTALDYVSTWVKEQQA

Atome Classification :

(24 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

A5A_A_2(3HXU)
SYA_ECOLI
[Raw transfer]



5AL_A_2(3HXY)
SYA_ECOLI
[Raw transfer]



SSA_A_2(3HXW)
SYA_ECOLI
[Raw transfer]



SSA_A_3(3HY1)
SYA_ECOLI
[Raw transfer]



G5A_A_3(3HY0)
SYA_ECOLI
[Raw transfer]



G5A_A_4(3HXV)
SYA_ECOLI
[Raw transfer]



G5A_A_3(3HY0)
SYA_ECOLI
[Raw transfer]



G5A_B_7(3HY0)
SYA_ECOLI
[Raw transfer]



ACP_A_2(3HXX)
SYA_ECOLI
[Raw transfer]



ATP_B_10(1YFR)
SYA_AQUAE
[Raw transfer]



ATP_A_9(1YFR)
SYA_AQUAE
[Raw transfer]



ALA_D_4(1YFS)
SYA_AQUAE
[Raw transfer]



GLY_B_2(1YFT)
SYA_AQUAE
[Raw transfer]



ALA_C_3(1YFS)
SYA_AQUAE
[Raw transfer]



SER_B_2(1YGB)
SYA_AQUAE
[Raw transfer]



ALA_C_3(1YFS)
SYA_AQUAE
[Raw transfer]
28 HHSearch 89.1729% -64 - C3 -3WQY - SYA_ARCFU -
15 PsiBlast_PDB 87.3927% -60 - C3 -3WQY - SYA_ARCFU -
16 PsiBlast_PDB 86.3527% -61 - C3 -3WQZ - SYA_ARCFU -
32 HHSearch 79.6648% -80 - C3 -3HY0 5.7 SYA_ECOLI
31 HHSearch 79.2449% -78 - C3 -1YFS 2.6 SYA_AQUAE
11 PsiBlast_PDB 78.1546% -80 - C3 -3HXY 8.7 SYA_ECOLI
12 PsiBlast_PDB 78.0546% -79 - C3 -3HXZ - SYA_ECOLI -
10 PsiBlast_PDB 78.0346% -77 - C3 -3HXX 10.1 SYA_ECOLI
26 PsiBlast_CBE 78.0046% -79 - C3 -3HXZ - SYA_ECOLI -
9 PsiBlast_PDB 78.0046% -78 - C3 -3HXW 8.7 SYA_ECOLI
24 PsiBlast_CBE 77.9046% -78 - C3 -3HY0 5.7 SYA_ECOLI
13 PsiBlast_PDB 77.8746% -79 - C3 -3HY0 5.7 SYA_ECOLI
27 PsiBlast_CBE 77.8246% -78 - C3 -3HXZ - SYA_ECOLI -
21 PsiBlast_CBE 77.7847% -76 - C3 -1YFS 3.8 SYA_AQUAE
3 PsiBlast_PDB 77.6947% -76 - C3 -1YFS 2.6 SYA_AQUAE
25 PsiBlast_CBE 77.6746% -78 - C3 -3HXZ - SYA_ECOLI -
2 PsiBlast_PDB 77.5847% -74 - C3 -1YFR 2.9 SYA_AQUAE
14 PsiBlast_PDB 77.5346% -75 - C3 -3HY1 7.7 SYA_ECOLI
1 PsiBlast_PDB 77.4547% -77 - C3 -3HTZ - SYA_AQUAE -
7 PsiBlast_PDB 77.3446% -79 - C3 -3HXU 8.8 SYA_ECOLI
5 PsiBlast_PDB 77.2147% -78 - C3 -1YGB 3.4 SYA_AQUAE
8 PsiBlast_PDB 77.2046% -78 - C3 -3HXV 5.8 SYA_ECOLI
4 PsiBlast_PDB 76.9947% -75 - C3 -1YFT 3.1 SYA_AQUAE
22 PsiBlast_CBE 76.9247% -75 - C3 -1YFR 5.3 SYA_AQUAE