@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo1519: (2016-03-25 )
MEKRTSYCGELNEAHIGQSVVLHGWVQKRRDLGGLIFIDLRDREGIVQVVFNPEFSKEALEIADSVRNEFVVTIKGTVHARGEKAINEKLATGKVEVLAEEITILNTSKTPPFYIEDGVNVSDELRLKYRYLDLRRPEMNNIFKMRHTVTRTFRNKLDALGFFDIETPYLTKSTPEGARDYLVPSRVYPGNFYALPQSPQILKQLLMTAGFDKYYQIVRCFRDEDLRGDRQPEFTQIDLETSFLTKEEIQAITEDMLVDVVKEAKNITIEKPFPRMTYKEAMDRFGSDKPDIRFGLELQNVSDVVKDVDFKVFQSAIENGGEVKAINAKAAAANFSRKDLDALGVFVANYGAKGLAWLKVEAGELKGPIAKFFPEDKAAELKVALQAEDGDLLLFAADKADIVAASLGALRNKLGKDLNLINEEELAFLWVTDWPLFEYDEEAERYVSAHHPFTLPKEEDIPLLETDSSKVMAEAYDIVLNGYEIGGGSLRIYKKEVQESMFRALGFTDESAKEQFGFLMDALEYGTPPHGGIALGLDRIVMILAGRNNLRDTIAFPKTGSAVDPLTNAPGEVSEAQLAELKLETVKKETN

Atome Classification :

(23 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

AMO_E_5(1G51)
SYD_THETH
[Raw transfer]




AMO_E_5(1C0A)
SYD_ECOLI
[Raw transfer]




AMO_E_5(1C0A)
SYD_ECOLI
[Raw transfer]




AMO_F_6(1G51)
SYD_THETH
[Raw transfer]




ASP_A_3(4O2D)
SYDND_MYCS2
[Raw transfer]




ASP_B_6(4O2D)
SYDND_MYCS2
[Raw transfer]




AMO_A_3(3NEM)
SYD_THEKO
[Raw transfer]




ASP_A_3(4WJ4)
SYDND_PSEAE
[Raw transfer]




GOL_B_15(1E1O)
SYK2_ECOLI
[Raw transfer]




ATP_B_4(3NEM)
SYD_THEKO
[Raw transfer]




ASP_A_3(3NEL)
SYD_THEKO
[Raw transfer]




3SY_A_2(4RMF)
SYDND_MYCS2
[Raw transfer]




4 PsiBlast_PDB 96.4552% -93 - C8 -4WJ3 - SYDND_PSEAE -
5 PsiBlast_PDB 94.8652% -89 - C8 -4WJ4 2.8 SYDND_PSEAE
3 PsiBlast_PDB 94.7652% -83 - C8 -1C0A 8.6 SYD_ECOLI
48 HHSearch 94.5252% -87 - C8 -1L0W - SYD_THETH -
23 PsiBlast_CBE 94.4652% -89 - C8 -1EQR - SYD_ECOLI -
21 PsiBlast_CBE 94.1852% -87 - C8 -1IL2 - SYD_ECOLI -
68 Fugue 94.1651% -80 - C8 -1C0A 8.6 SYD_ECOLI
1 PsiBlast_PDB 94.1052% -88 - C8 -1EQR - SYD_ECOLI -
2 PsiBlast_PDB 93.8252% -89 - C8 -1IL2 - SYD_ECOLI -
22 PsiBlast_CBE 93.2352% -87 - C8 -1EQR - SYD_ECOLI -
6 PsiBlast_PDB 92.3150% -80 - C8 -1EFW - SYD_THETH -
8 PsiBlast_PDB 92.0250% -80 - C8 -1L0W - SYD_THETH -
7 PsiBlast_PDB 91.8650% -77 - C8 -1G51 7.5 SYD_THETH
24 PsiBlast_CBE 91.7950% -78 - C8 -1G51 7.9 SYD_THETH
10 PsiBlast_PDB 89.0545% -82 - C8 -4RMF 3.3 SYDND_MYCS2
9 PsiBlast_PDB 88.9145% -81 - C8 -4O2D 3.6 SYDND_MYCS2
11 PsiBlast_PDB 83.5940% -74 - C8 -4AH6 - SYDM_HUMAN -
25 PsiBlast_CBE 81.9445% -76 - C8 -4O2D 3.8 SYDND_MYCS2
52 HHSearch 70.0730% -79 * C8 *3NEM - SYD_THEKO -
49 HHSearch 65.8730% -76 - C8 -1WYD - SYDND_SULTO -
26 PsiBlast_CBE 60.2633% -82 - C8 -3NEM 4.0 SYD_THEKO
12 PsiBlast_PDB 59.4833% -79 - C8 -3NEL 3.5 SYD_THEKO
13 PsiBlast_PDB 59.0933% -81 - C8 -3NEM 4.8 SYD_THEKO