@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo1534: (2016-03-25 )
MKPRKVMIIGAGNVGTAAAHAFVNQKFVEELILVDLNKERVEGNRKDLADAAAFMPGKMDITVRDASDCADVDIAVITVTAGPLKEGQTRLDELRSTSRIVSGIVPEMMKGGFNGIFLIATNPCDIITYQVWKLSGLPRERVLGTGVWLDTTRLRRLLAEKLDIAAQSIDAFILGEHGDSQFPVWSHSSIYGKPVNEYSLEKLGESLDLKQIGETARDTGFEIYHQKGCTEYGIGGTIVEICRHIFSGSQRALTVSCVLDGEYGESGLAIGVPAVLSQNGVKEIISLKLDEQEQQAFANSVSVIKKSIASI

Atome Classification :

(30 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NAD_E_5(1EZ4)
LDH_LACPE
[Raw transfer]




NAD_G_7(1EZ4)
LDH_LACPE
[Raw transfer]




NAD_E_5(1EZ4)
LDH_LACPE
[Raw transfer]




NAD_F_6(1EZ4)
LDH_LACPE
[Raw transfer]




NAD_H_8(1EZ4)
LDH_LACPE
[Raw transfer]




PYR_B_6(3D4P)
LDH1_STAAC
[Raw transfer]




PYR_A_4(3D4P)
LDH1_STAAC
[Raw transfer]




PYR_B_7(3H3J)
LDH1_STAAC
[Raw transfer]




PYR_A_4(3H3J)
LDH1_STAAC
[Raw transfer]




MPD_A_6(4M1Q)
?
[Raw transfer]




4 PsiBlast_PDB 96.2342%-125 - C6 -4LMR - LDH1_BACCR -
41 PsiBlast_CBE 95.5241%-121 - C6 -1LDN - LDH_GEOSE -
39 PsiBlast_CBE 95.1641%-123 - C6 -1LDN - LDH_GEOSE -
26 PsiBlast_CBE 94.6741%-125 - C6 -3WSV - ? -
23 PsiBlast_CBE 94.3941%-127 - C6 -3WSW - ? -
28 PsiBlast_CBE 94.3841%-124 - C6 -3WSV - ? -
25 PsiBlast_CBE 94.1041%-124 - C6 -3WSW - ? -
11 PsiBlast_PDB 94.0241%-124 - C6 -1LDN - LDH_GEOSE -
40 PsiBlast_CBE 94.0141%-123 - C6 -1LDN - LDH_GEOSE -
42 PsiBlast_CBE 93.7441%-122 - C6 -1LDN - LDH_GEOSE -
43 PsiBlast_CBE 93.6641%-123 - C6 -1LDN - LDH_GEOSE -
5 PsiBlast_PDB 93.6442%-126 - C6 -4LN1 - LDH1_BACCR -
38 PsiBlast_CBE 93.5341%-122 - C6 -1LDN - LDH_GEOSE -
129 HHSearch 93.5041%-118 - C6 -1LDN - LDH_GEOSE -
7 PsiBlast_PDB 93.3741%-126 - C6 -3WSW - ? -
24 PsiBlast_CBE 93.1241%-128 - C6 -3WSW - ? -
6 PsiBlast_PDB 92.9841%-130 - C6 -3WSV - ? -
8 PsiBlast_PDB 92.8942%-128 - C6 -3PQD - LDH_BACSU -
44 PsiBlast_CBE 92.6941%-118 - C6 -1LDN - LDH_GEOSE -
126 HHSearch 92.5442%-116 - C6 -3D0O - LDH1_STAAC -
17 PsiBlast_PDB 92.3840%-127 - C6 -4M1Q 3.3 ?
2 PsiBlast_PDB 92.2942%-121 - C6 -3D4P 2.6 LDH1_STAAC
22 PsiBlast_CBE 91.8742%-116 - C6 -3H3J 3.5 LDH1_STAAC
3 PsiBlast_PDB 91.1642%-116 - C6 -3H3J 3.4 LDH1_STAAC
21 PsiBlast_CBE 91.0942%-119 - C6 -3D4P 2.9 LDH1_STAAC
124 HHSearch 89.5739%-122 - C6 -1EZ4 8.3 LDH_LACPE
74 PsiBlast_CBE 89.4139%-119 - C6 -1EZ4 6.3 LDH_LACPE
72 PsiBlast_CBE 89.1339%-118 - C6 -1EZ4 6.2 LDH_LACPE
20 PsiBlast_PDB 88.5939%-125 - C6 -1EZ4 8.3 LDH_LACPE
73 PsiBlast_CBE 88.3439%-123 - C6 -1EZ4 7.6 LDH_LACPE