@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo1537: (2016-03-25 )
MFVDQVKIYVKAGNGGDGMVAFRREKFVPNGGPAGGDGGKGADVVFVVDEGLRTLVDFRFKRIFKAEHGEHGMSKSMHGRGAEDLVVKVPQGTIVKDIDTGEIIADLVAHGQRAVIAKAGRGGRGNKRFATPANPAPELSENGEPGQERNVQLELKVLADVGLVGFPSVGKSTLLSVVSAARPKIAAYHFTTIVPNLGMVDAGDGRSFVMADLPGLIEGASQGVGLGHQFLRHIERTRVIVHVIDMSGSEGRVPYEDYMAINNELEQYNLRLMERPQIIVANKMDMPDAEENLNEFKTKIAEDIPVFPISAVTKTGLRELLLAIADKLETTPEFPLNEILEQEDEDTVLYKYVAEEPDFEISREPDGTFVLSGAKIERLFTMTNFERDASISRFARQLRAMGVDEALRKRGAKDGDIVRLLDYEFEFMD

Atome Classification :

(21 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

GDP_A_2(3GEE)
MNME_CHLTE
[Raw transfer]




GDP_A_2(2DBY)
?
[Raw transfer]




28 HHSearch 85.0979% -84 - C2 -1LNZ - OBG_BACSU -
1 PsiBlast_PDB 83.9676% -82 - C2 -1LNZ - OBG_BACSU -
27 HHSearch 83.0442% -72 - C2 -1UDX - OBG_THET8 -
2 PsiBlast_PDB 82.7141% -73 - C2 -1UDX - OBG_THET8 -
49 Fugue 82.2142% -68 - C2 -1UDX - OBG_THET8 -
10 PsiBlast_PDB 52.5931% -88 - C2 -3R9W - ERA_AQUAE -
14 PsiBlast_PDB 52.5830% -97 - C2 -2DYK - ? -
16 PsiBlast_PDB 52.5223%-125 - C2 -2WJI - FEOB_METJA -
9 PsiBlast_PDB 52.0631% -86 - C2 -3IEV - ERA_AQUAE -
11 PsiBlast_PDB 51.1231% -82 - C2 -3R9X - ERA_AQUAE -
7 PsiBlast_PDB 50.7931% -88 - C2 -2E87 - ? -
20 PsiBlast_PDB 50.5522%-119 - C2 -2WJJ - FEOB_METJA -
32 HHSearch 50.5134% -64 - C2 -2DBY - ? -
34 HHSearch 50.4627% -87 - C2 -3IEV - ERA_AQUAE -
18 PsiBlast_PDB 49.7725%-104 - C2 -3K53 - ? -
17 PsiBlast_PDB 49.0823%-125 - C2 -2WJH - FEOB_METJA -
40 HHSearch 48.8420% -82 - C2 -3B1V - ? -
55 Fugue 48.5616% -88 - C2 -1PUI - ENGB_ECOLI -
52 Fugue 48.4223% -82 - C2 -1M2O - SAR1_YEAST -
35 HHSearch 48.1224% -87 - C2 -1WF3 - ERA_THET8 -
4 PsiBlast_PDB 33.8035% -76 - C2 -2DBY 4.6 ?