@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo1538: (2016-03-25 )
MEKKYILALDQGTTSSRAMIIDEEGEVIGVAQEEFDQIFPKPGWVEHNANEIWASILAVIAGVLLKTNISSKEIAGIGITNQRETTVIWDKESGNPIYNAIVWQSRQTEDICKQLRKDGYEDTIRSKTGLLIDPYFAGTKARWILDHVDGAQERAEKGELLFGTIDTWLVWKLTGGRAHITDYSNASRTLLYNIYDLEWDDELLKMLNIPKAMLPEVRPSSEVYADTVPYHFFGEEVPVAGIAGDQQAALFGQGCFEKGMAKNTYGTGCFLLMNTGEKAVRSENGLLTTLAWGIDGKVEYALEGSIFVAGSAIQWLRDGLRMVRQSSDSENYASRIESSDGVYVVPAFVGLGAPYWDSDVRGAVFGLTRGTEKEQFIRATLESLAYQTRDVLYAMEQDSGISLKTLRVDGGASANNFLMQFQSDILGVPVERPENKETTVLGAAFLAGLAVGVWKDKNEIKKHWKLDKRFEVEMKEEQREDLYEGWHKAVKAAQAFK

Atome Classification :

(40 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ADP_G_5(1GLD)
GLPK_ECOLI
[Raw transfer]




ADP_G_6(1GLC)
GLPK_ECOLI
[Raw transfer]




ADP_G_6(1GLE)
GLPK_ECOLI
[Raw transfer]




ATS_Y_4(1GLJ)
GLPK_ECOLI
[Raw transfer]




ATF_Y_5(1BWF)
GLPK_ECOLI
[Raw transfer]




ACP_Y_5(1GLL)
GLPK_ECOLI
[Raw transfer]




ATS_O_5(1GLJ)
GLPK_ECOLI
[Raw transfer]




ACP_O_6(1GLL)
GLPK_ECOLI
[Raw transfer]




ATF_O_6(1BWF)
GLPK_ECOLI
[Raw transfer]




GOL_I_9(1BOT)
GLPK_ECOLI
[Raw transfer]




GOL_O_7(3H46)
GLPK_ENTCA
[Raw transfer]




GOL_G_9(1GLA)
GLPK_ECOLI
[Raw transfer]




GOL_Z_5(1BO5)
GLPK_ECOLI
[Raw transfer]




GOL_O_8(3H3N)
GLPK_ENTCA
[Raw transfer]




GOL_O_3(3D7E)
GLPK_ENTCA
[Raw transfer]




GOL_O_3(3FLC)
GLPK_ENTCA
[Raw transfer]




GOL_O_4(1BO5)
GLPK_ECOLI
[Raw transfer]




GOL_G_7(1BOT)
GLPK_ECOLI
[Raw transfer]




GOL_C_3(1XUP)
GLPK_ENTCA
[Raw transfer]




EDO_O_10(3H3N)
GLPK_ENTCA
[Raw transfer]




EDO_A_5(2W41)
?
[Raw transfer]




MPD_C_3(2D4W)
?
[Raw transfer]




MPD_C_3(2D4W)
?
[Raw transfer]




MPD_D_4(2D4W)
?
[Raw transfer]




EDO_B_25(2W41)
?
[Raw transfer]




EDO_A_9(2W41)
?
[Raw transfer]




73 HHSearch 97.9470% -85 - C1 -3G25 - GLPK_STAAC -
1 PsiBlast_PDB 97.1568% -85 - C1 -3G25 - GLPK_STAAC -
36 PsiBlast_CBE 96.5864% -80 - C1 -3H46 3.6 GLPK_ENTCA
16 PsiBlast_PDB 96.5864% -80 - C1 -3H46 - GLPK_ENTCA -
43 PsiBlast_CBE 96.5064% -79 - C1 -3H3N 3.5 GLPK_ENTCA
39 PsiBlast_CBE 96.4964% -83 - C1 -3H45 - GLPK_ENTCA -
15 PsiBlast_PDB 96.4964% -83 - C1 -3H45 - GLPK_ENTCA -
42 PsiBlast_CBE 96.3664% -81 - C1 -3H3O - GLPK_ENTCA -
40 PsiBlast_CBE 96.3664% -81 - C1 -3H3O - GLPK_ENTCA -
77 HHSearch 96.2564% -79 - C1 -3H3N - GLPK_ENTCA -
2 PsiBlast_PDB 96.1868% -83 - C1 -3GE1 - GLPK_STAAC -
37 PsiBlast_CBE 95.9464% -81 - C1 -3H45 - GLPK_ENTCA -
18 PsiBlast_PDB 95.8164% -79 - C1 -3H3O - GLPK_ENTCA -
38 PsiBlast_CBE 95.6464% -80 - C1 -3H45 - GLPK_ENTCA -
14 PsiBlast_PDB 95.6464% -79 - C1 -3FLC 3.5 GLPK_ENTCA
44 PsiBlast_CBE 94.9564% -80 - C1 -3D7E - GLPK_ENTCA -
19 PsiBlast_PDB 94.9564% -80 - C1 -3D7E 3.6 GLPK_ENTCA
41 PsiBlast_CBE 94.3864% -80 - C1 -3H3O - GLPK_ENTCA -
21 PsiBlast_CBE 94.2663% -81 - C1 -3EZW - GLPK_ECOLI -
75 HHSearch 94.1163% -77 - C1 -3EZW - GLPK_ECOLI -
46 PsiBlast_CBE 92.6163% -80 - C1 -1GLL 5.2 GLPK_ECOLI
49 PsiBlast_CBE 92.5463% -78 - C1 -1BWF 5.6 GLPK_ECOLI
48 PsiBlast_CBE 92.1363% -80 - C1 -1GLJ 6.9 GLPK_ECOLI
34 PsiBlast_CBE 91.7163% -76 - C1 -1BO5 2.7 GLPK_ECOLI
47 PsiBlast_CBE 91.6963% -76 - C1 -1GLJ 6.4 GLPK_ECOLI
6 PsiBlast_PDB 91.6163% -75 - C1 -1GLA 2.4 GLPK_ECOLI
33 PsiBlast_CBE 91.4263% -77 - C1 -1BOT 4.6 GLPK_ECOLI
13 PsiBlast_PDB 91.3863% -75 - C1 -1BO5 4.1 GLPK_ECOLI
9 PsiBlast_PDB 91.1363% -74 - C1 -1GLD 5.6 GLPK_ECOLI
8 PsiBlast_PDB 91.1163% -76 - C1 -1GLC 5.1 GLPK_ECOLI
20 PsiBlast_PDB 90.7763% -75 - C1 -1BWF 5.9 GLPK_ECOLI
45 PsiBlast_CBE 90.2763% -74 - C1 -1GLL 4.8 GLPK_ECOLI
10 PsiBlast_PDB 90.2563% -73 - C1 -1GLE 5.3 GLPK_ECOLI
82 HHSearch 89.7152% -81 - C1 -2D4W 3.9 ?
12 PsiBlast_PDB 89.7163% -74 - C1 -1BOT 4.1 GLPK_ECOLI
53 PsiBlast_CBE 89.6452% -85 - C1 -2D4W 3.9 ?
52 PsiBlast_CBE 88.8152% -84 - C1 -2D4W 3.2 ?
51 PsiBlast_CBE 84.4464% -71 - C1 -1XUP 2.5 GLPK_ENTCA
66 PsiBlast_CBE 80.9938% -77 - C1 -2W41 2.9 ?
67 PsiBlast_CBE 80.8138% -77 - C1 -2W41 3.1 ?