@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo1559: (2016-03-26 )
MKITFPDGAVKEFEPGVSTADIAASISPGLKKKALAGKLNGELLDLVTPIHEDGAIEIVTPDHEDALGILRHSTAHLMAQALKRLYPDVKFGVGPAIESGFYYDIDTEAVISDESLVEIEKEMQKIVRENVPIEREVVSREEAIKRFKAIGDQYKLELIEAIPEDETVTIYTQGEFFDLCRGVHVPSTGKIQVFKLLSVAGAYWRGDSNNKMLQRIYGTAFFDKNGLKEFIQMQKEAKERDHRKLGKELELFTNSIEVGQGLPLWLPKGATIRRVIERYIVDKEERLGYNHVYTPIMANVELYKTSGHWDHYHEDMFPTMKMDNEELVLRPMNCPHHMMIYKNDIHSYRELPIRIAELGMMHRYEMSGALSGLQRVRGMTLNDAHVFVRPDQIKDEFKRVVELILEVYKDFDITDYSFRLSYRDPKNTEKYFDDDAMWEKAQAMLKSAMDEMEMDYFEAEGEAAFYGPKLDVQVKTAIGKEETLSTVQLDFLLPERFDLTYIGEDGEKHRPVVIHRGVVSTMERFVAYLIEEYKGAFPTWLAPVQMEIIPVNADAHLDYAKGVQDKLQRAGLRAEVDDRNEKLGYKIREAQTKKIPYALVLGDQEVEAGSVNVRRYGSKDSETMDLDAFIAQVVAEVSKY

Atome Classification :

(30 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

409_A_4(4HWO)
SYT_ECOLI
[Raw transfer]



409_B_6(4HWO)
SYT_ECOLI
[Raw transfer]



TSB_A_3(3UH0)
SYTM_YEAST
[Raw transfer]



TSB_A_3(3UH0)
SYTM_YEAST
[Raw transfer]



SSA_A_5(1FYF)
SYT_ECOLI
[Raw transfer]



1B2_A_4(4HWR)
SYT_ECOLI
[Raw transfer]



1B2_B_6(4HWR)
SYT_ECOLI
[Raw transfer]



SSA_B_6(1FYF)
SYT_ECOLI
[Raw transfer]



X16_B_6(4HWP)
SYT_ECOLI
[Raw transfer]



X16_A_4(4HWP)
SYT_ECOLI
[Raw transfer]



1B3_B_6(4HWS)
SYT_ECOLI
[Raw transfer]



1B3_A_4(4HWS)
SYT_ECOLI
[Raw transfer]



1B2_B_6(4HWT)
SYTC_HUMAN
[Raw transfer]



AMP_A_4(1QF6)
SYT_ECOLI
[Raw transfer]



THR_B_5(1EVK)
SYT_ECOLI
[Raw transfer]



1B2_A_4(4HWT)
SYTC_HUMAN
[Raw transfer]



2CR_B_9(4P3O)
SYT_ECOLI
[Raw transfer]



2CR_A_4(4P3P)
SYT_ECOLI
[Raw transfer]



2CR_A_4(4P3O)
SYT_ECOLI
[Raw transfer]



2CR_B_8(4P3P)
SYT_ECOLI
[Raw transfer]
2 PsiBlast_PDB 98.4372% -93 - C4 -1NYR - SYT_STAAW -
1 PsiBlast_PDB 98.1872% -95 - C4 -1NYQ - SYT_STAAW -
94 HHSearch 98.1172% -92 - C4 -1NYR - SYT_STAAW -
22 PsiBlast_CBE 96.2872% -91 - C4 -1NYQ - SYT_STAAW -
21 PsiBlast_CBE 95.4172% -91 - C4 -1NYR - SYT_STAAW -
93 HHSearch 86.9942% -91 - C4 -1QF6 4.6 SYT_ECOLI
3 PsiBlast_PDB 86.9942% -95 - C3 -1QF6 - SYT_ECOLI -
34 PsiBlast_CBE 70.9641% -91 - C4 -1EVK 3.2 SYT_ECOLI
5 PsiBlast_PDB 70.8641% -90 - C4 -1EVL - SYT_ECOLI -
6 PsiBlast_PDB 70.8241% -91 - C4 -1FYF 5.9 SYT_ECOLI
10 PsiBlast_PDB 70.6741% -92 - C4 -4HWR 5.2 SYT_ECOLI
97 HHSearch 70.6142% -86 * C4 *1EVL - SYT_ECOLI -
33 PsiBlast_CBE 70.5941% -89 - C4 -1EVL - SYT_ECOLI -
32 PsiBlast_CBE 70.5841% -90 - C4 -1EVL - SYT_ECOLI -
37 PsiBlast_CBE 70.5741% -88 - C4 -4HWP 5.9 SYT_ECOLI
35 PsiBlast_CBE 70.5441% -89 - C4 -4HWS 5.3 SYT_ECOLI
38 PsiBlast_CBE 70.5041% -88 - C4 -4HWO 6.6 SYT_ECOLI
9 PsiBlast_PDB 70.4941% -88 - C4 -4HWP 4.6 SYT_ECOLI
36 PsiBlast_CBE 70.3741% -90 - C4 -4HWR 5.2 SYT_ECOLI
30 PsiBlast_CBE 70.3341% -89 - C4 -1FYF 6.4 SYT_ECOLI
8 PsiBlast_PDB 70.3341% -89 - C4 -4HWO 6.6 SYT_ECOLI
39 PsiBlast_CBE 70.1141% -88 - C4 -4P3P 8.8 SYT_ECOLI
11 PsiBlast_PDB 69.8041% -90 - C4 -4HWS 4.7 SYT_ECOLI
13 PsiBlast_PDB 69.6841% -86 - C4 -4P3P 9.0 SYT_ECOLI
40 PsiBlast_CBE 69.6741% -85 - C4 -4P3O 8.5 SYT_ECOLI
12 PsiBlast_PDB 69.5641% -89 - C4 -4P3O 8.5 SYT_ECOLI
41 PsiBlast_CBE 67.8039% -83 - C4 -4HWT 5.3 SYTC_HUMAN
14 PsiBlast_PDB 66.8239% -86 - C4 -4HWT 3.7 SYTC_HUMAN
96 HHSearch 66.7335% -81 - C4 -3UH0 6.5 SYTM_YEAST
18 PsiBlast_PDB 65.1635% -81 - C4 -3UH0 6.5 SYTM_YEAST