@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo1566: (2016-03-26 )
MSQKIQVENGVLKTPNNPVIPFIEGDGTGPDIWAAAKRVLDAAVKKAYNGEKEIAWKEVLAGEKAFKQTGEWLPQATLDTIDEYLIAIKGPLTTPIGGGIRSLNVALRQELDLYVCLRPVRYFKGVPSPVKRPEDTDMVIFRENTEDIYAGIEFKEGSIESKKLIDFLKSEFGVDKIRFPETSGIGIKPISKEGTERLVRSAIEYAIKEGRKSLTLVHKGNIMKFTEGAFKNWGYDLCEREYGDKVFTWNEYDRIKEAEGTEVADAKQNEALAAGKILVKDSIADIFLQQILTRPAEFDVVATMNLNGDYISDALAAQVGGIGIAPGANINYLTGHAIFEATHGTAPKYAGLDKVNPSSVILSGTLLLEHIGWGEAAALINQSMEKTIAAKTVTYDFARLMDGATEVKCSEFADELIKNF

Atome Classification :

(41 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ICT_A_4(1CW7)
IDH_ECOLI
[Raw transfer]




ICT_A_3(5ICD)
IDH_ECOLI
[Raw transfer]




ICA_A_3(1AI2)
IDH_ECOLI
[Raw transfer]




ICT_E_5(1PB1)
IDH_ECOLI
[Raw transfer]




ICT_A_4(1P8F)
IDH_ECOLI
[Raw transfer]




CIT_A_3(1HQS)
IDH_BACSU
[Raw transfer]




AKG_A_3(1BL5)
IDH_ECOLI
[Raw transfer]




ICT_A_3(1GRP)
IDH_ECOLI
[Raw transfer]




ICT_A_3(1GRO)
IDH_ECOLI
[Raw transfer]




ICT_A_4(1CW1)
IDH_ECOLI
[Raw transfer]




ICT_A_2(4BNP)
IDH_ECOLI
[Raw transfer]




ICT_A_3(8ICD)
IDH_ECOLI
[Raw transfer]




CIT_F_6(2D1C)
IDH_THET8
[Raw transfer]




AKG_A_4(1CW4)
IDH_ECOLI
[Raw transfer]




CIT_B_4(1HQS)
IDH_BACSU
[Raw transfer]




IPM_A_4(1HJ6)
IDH_ECOLI
[Raw transfer]




NAP_A_3(4AJR)
IDH_ECOLI
[Raw transfer]




NAP_A_2(4AJ3)
IDH_ECOLI
[Raw transfer]




NAP_C_3(2D1C)
IDH_THET8
[Raw transfer]




NAP_A_5(1HJ6)
IDH_ECOLI
[Raw transfer]




NAP_C_3(2D1C)
IDH_THET8
[Raw transfer]




NAP_C_3(2D1C)
IDH_THET8
[Raw transfer]




NAP_D_4(2D1C)
IDH_THET8
[Raw transfer]




NAP_A_2(1AI2)
IDH_ECOLI
[Raw transfer]




NAP_A_3(2E5M)
?
[Raw transfer]




NAP_B_4(2E5M)
?
[Raw transfer]




TAP_A_2(4AJA)
IDH_ECOLI
[Raw transfer]




GOL_A_6(3TY4)
LYS12_SCHPO
[Raw transfer]




NAP_A_5(1XKD)
?
[Raw transfer]




TAP_A_2(4AJB)
IDH_ECOLI
[Raw transfer]




NAP_B_7(1XKD)
?
[Raw transfer]




NDO_A_2(1AI3)
IDH_ECOLI
[Raw transfer]




NAP_C_3(9ICD)
IDH_ECOLI
[Raw transfer]




A2P_A_2(4AJS)
IDH_ECOLI
[Raw transfer]




A2P_A_2(4AJC)
IDH_ECOLI
[Raw transfer]




AMP_I_9(1ISO)
IDH_ECOLI
[Raw transfer]




TRS_A_2(2Y3Z)
LEU3_THET8
[Raw transfer]




21 PsiBlast_CBE 99.7281% -84 - C6 -1HQS 3.2 IDH_BACSU
68 HHSearch 99.1481% -82 - C6 -1HQS 3.9 IDH_BACSU
1 PsiBlast_PDB 98.9781% -83 - C6 -1HQS - IDH_BACSU -
67 HHSearch 92.5659% -80 - C6 -2D4V - ? -
32 PsiBlast_CBE 91.8659% -82 - C6 -2D4V - ? -
34 PsiBlast_CBE 91.6159% -83 - C6 -2D4V - ? -
33 PsiBlast_CBE 91.3359% -81 - C6 -2D4V - ? -
35 PsiBlast_CBE 91.3259% -81 - C6 -2D4V - ? -
5 PsiBlast_PDB 90.6063% -79 - C6 -1PB3 - IDH_ECOLI -
4 PsiBlast_PDB 90.5663% -79 - C6 -1PB1 4.0 IDH_ECOLI
28 PsiBlast_CBE 90.3663% -77 - C6 -1CW7 3.2 IDH_ECOLI
20 PsiBlast_PDB 90.3463% -81 - C6 -1CW1 4.1 IDH_ECOLI
27 PsiBlast_CBE 90.1263% -80 - C6 -1CW4 3.1 IDH_ECOLI
31 PsiBlast_CBE 90.0962% -79 - C6 -1ISO 3.6 IDH_ECOLI
26 PsiBlast_CBE 90.0863% -80 - C6 -4AJB 6.7 IDH_ECOLI
14 PsiBlast_PDB 89.9863% -81 - C6 -4AJA 6.6 IDH_ECOLI
3 PsiBlast_PDB 89.9463% -78 - C6 -1P8F 3.3 IDH_ECOLI
2 PsiBlast_PDB 89.9263% -78 - C6 -1BL5 3.7 IDH_ECOLI
23 PsiBlast_CBE 89.7463% -78 - C6 -4AJS 5.5 IDH_ECOLI
17 PsiBlast_PDB 89.7463% -78 - C6 -1HJ6 8.3 IDH_ECOLI
25 PsiBlast_CBE 89.6863% -81 - C6 -4AJC 4.8 IDH_ECOLI
7 PsiBlast_PDB 89.6063% -79 - C6 -1AI3 6.2 IDH_ECOLI
6 PsiBlast_PDB 89.5463% -80 - C6 -1AI2 6.9 IDH_ECOLI
11 PsiBlast_PDB 89.5263% -78 - C6 -9ICD 4.8 IDH_ECOLI
13 PsiBlast_PDB 89.4663% -78 - C6 -4AJ3 8.7 IDH_ECOLI
24 PsiBlast_CBE 89.4163% -80 - C6 -4AJR 9.2 IDH_ECOLI
29 PsiBlast_CBE 89.3963% -80 - C6 -1GRP 3.2 IDH_ECOLI
19 PsiBlast_PDB 89.3863% -76 - C6 -8ICD 3.6 IDH_ECOLI
22 PsiBlast_CBE 89.2863% -78 - C6 -4BNP 4.1 IDH_ECOLI
10 PsiBlast_PDB 89.0963% -78 - C6 -5ICD 3.5 IDH_ECOLI
30 PsiBlast_CBE 88.8862% -80 - C6 -1GRO 3.0 IDH_ECOLI
38 PsiBlast_CBE 83.2648% -80 - C6 -1XKD 7.0 ?
42 PsiBlast_CBE 83.0847% -83 - C6 -2E5M 7.1 ?
39 PsiBlast_CBE 82.5748% -83 - C6 -1XKD 7.5 ?
41 PsiBlast_CBE 82.5647% -82 - C6 -2E5M 7.1 ?
90 Fugue 74.5837% -70 - C6 -2D1C 7.0 IDH_THET8
75 HHSearch 69.2139% -75 - C6 -2D1C 8.2 IDH_THET8
43 PsiBlast_CBE 69.1533% -71 - C6 -2D1C 8.2 IDH_THET8
44 PsiBlast_CBE 68.7933% -71 - C6 -2D1C 8.3 IDH_THET8
85 HHSearch 67.6230% -74 - C6 -2Y3Z 3.5 LEU3_THET8
76 HHSearch 67.1630% -76 - C6 -3TY4 2.9 LYS12_SCHPO