@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo1578: (2016-03-26 )
MEKNIDVLQNWLKDQGAEVGFLTDPENIAYFSGYHSEPHERVLGLAVFSDSEPFLFTPALEVEDVRGGDWTHPAYGYNDTENPFTIIADEIKKRVANPSKFAIEKKHMSVDRYEQLGGLFSGSSFIPIEHKIEQIRLIKTEAELKILKEAALLADYAVQVGVDEIAEGKTEAEIVAKIEYEMKKKGVTAMSFDTMVLTGKNGALPHGTPGETKIKKGDLVLFDLGVVHKGYCSDITRTVAFGDISDEQKKIYDTVLEAQIAAVEKVKAGVKASEIDLTARNIIREAGFGDYFPHRLGHGLGASVHEFPSITETNSMELQENMVFTIEPGIYVPGVAGVRIEDDLVVTKDGVQVLTEFPKTLQVIE

Atome Classification :

(31 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

P6G_A_6(3CTZ)
XPP1_HUMAN
[Raw transfer]




MRD_A_8(2BHB)
AMPP_ECOLI
[Raw transfer]




PG4_A_3(1WLR)
AMPP_ECOLI
[Raw transfer]




CHAIN_B_2(1N51)
AMPP_ECOLI
[Raw transfer]

-

IPA_A_7(1WL6)
AMPP_ECOLI
[Raw transfer]




CHAIN_B_2(2BHD)
AMPP_ECOLI
[Raw transfer]

-

LEU_A_3(1A16)
AMPP_ECOLI
[Raw transfer]




CHAIN_B_2(2V3Z)
AMPP_ECOLI
[Raw transfer]

-

CHAIN_B_2(2BHA)
AMPP_ECOLI
[Raw transfer]

-

LEU_A_3(2BH3)
AMPP_ECOLI
[Raw transfer]




LEU_A_3(2BN7)
AMPP_ECOLI
[Raw transfer]




72 HHSearch 97.1637% -78 - C1 -1WY2 - PEPQ_PYRHO -
62 Fugue 94.5840% -78 - C1 -1PV9 - PEPQ_PYRFU -
3 PsiBlast_PDB 94.4738% -77 - C1 -3Q6D - ? -
22 PsiBlast_CBE 93.7838% -75 - C1 -3Q6D - ? -
24 PsiBlast_CBE 93.5338% -75 - C1 -3Q6D - ? -
23 PsiBlast_CBE 93.1538% -75 - C1 -3Q6D - ? -
6 PsiBlast_PDB 92.9039% -76 - C1 -4FKC - ? -
1 PsiBlast_PDB 92.4337% -79 - C1 -1PV9 - PEPQ_PYRFU -
61 Fugue 92.3635% -79 - C1 -1WN1 - ? -
71 HHSearch 92.2735% -79 - C1 -1WN1 - ? -
69 HHSearch 91.7136% -79 - C1 -3Q6D - ? -
25 PsiBlast_CBE 91.7139% -79 - C1 -4RGZ - ? -
70 HHSearch 90.8133% -81 - C1 -2ZSG - ? -
5 PsiBlast_PDB 89.6639% -73 - C1 -4RGZ - ? -
4 PsiBlast_PDB 88.8834% -83 - C1 -2ZSG - ? -
7 PsiBlast_PDB 87.2935% -77 - C1 -1WN1 - ? -
10 PsiBlast_PDB 87.2330% -84 - C1 -4R60 - ? -
26 PsiBlast_CBE 86.4635% -72 - C1 -1WN1 - ? -
8 PsiBlast_PDB 85.9935% -74 - C1 -2HOW - ? -
9 PsiBlast_PDB 85.6331% -68 - C1 -4EGE - ? -
81 HHSearch 72.9833% -79 * C1 *2V3Z 5.5 AMPP_ECOLI
13 PsiBlast_PDB 67.6431% -76 - C1 -1WL6 2.7 AMPP_ECOLI
19 PsiBlast_PDB 67.5831% -76 - C1 -1A16 3.9 AMPP_ECOLI
14 PsiBlast_PDB 67.0531% -76 - C1 -1WLR 2.6 AMPP_ECOLI
27 PsiBlast_CBE 66.7431% -75 - C1 -2BN7 2.6 AMPP_ECOLI
18 PsiBlast_PDB 66.2231% -75 - C1 -2BHD 3.3 AMPP_ECOLI
12 PsiBlast_PDB 65.5131% -75 - C1 -1N51 6.9 AMPP_ECOLI
20 PsiBlast_PDB 65.3131% -76 - C1 -2BH3 2.6 AMPP_ECOLI
15 PsiBlast_PDB 64.8631% -74 - C1 -2BHA 5.1 AMPP_ECOLI
16 PsiBlast_PDB 64.7031% -74 - C1 -2BHB 3.2 AMPP_ECOLI
47 PsiBlast_CBE 49.0431% -61 - C1 -3CTZ 2.8 XPP1_HUMAN