@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo1579: (2016-03-26 )
MLVGVPKEIKNNENRVAMTPASVFSYVNAGHTVYVEKDAGIGSNYQDADFVQAGAKIVETAKEAWDVDMVVKVKEPIASEYTYFKEGLLLFTYLHLANEPTLAKALMESKVNSVAYETVELADHTLPLLSPMSEVAGRMAAQIGAQFLQRTNGGMGVLLGGVPGVERSEVVIIGGGIAGTNAAKIAAGLGANVTILDMNLKRLRELDDIFGNQVQTLMSNDFNIETAVKKADLVIGAVLIPGAKAPKLVKEHVVKQMIPGSVLVDIAIDQGGIFETTDHVSTHDNPTYEKYGVLHYAVANMPGAVPRTSTLALTNATLPFGLKLANQGLEAAVQNDPFLLRGLNTYQGHITYKAVADSLDLPYTDSKELI

Atome Classification :

(29 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NAI_B_4(2VHZ)
DHA_MYCTU
[Raw transfer]




NAI_B_4(2VHV)
DHA_MYCTU
[Raw transfer]




NAI_A_3(2VHZ)
DHA_MYCTU
[Raw transfer]




NAI_A_3(2VHV)
DHA_MYCTU
[Raw transfer]




NAD_E_8(2VOJ)
DHA_MYCTU
[Raw transfer]




NAD_C_6(2VOJ)
DHA_MYCTU
[Raw transfer]




NAD_G_7(1PJC)
?
[Raw transfer]




NAD_G_7(1PJC)
?
[Raw transfer]




NAD_G_7(1PJC)
?
[Raw transfer]




NAD_A_4(2VOJ)
DHA_MYCTU
[Raw transfer]




NAD_G_7(1PJC)
?
[Raw transfer]




NAD_G_7(1PJC)
?
[Raw transfer]




GOL_A_6(2FSV)
PNTAA_RHORT
[Raw transfer]




GOL_B_8(2FSV)
PNTAA_RHORT
[Raw transfer]




6MD_A_2(4LMP)
?
[Raw transfer]




GOL_B_6(1PTJ)
PNTAA_RHORT
[Raw transfer]




GOL_B_7(1NM5)
PNTAA_RHORT
[Raw transfer]




2OP_C_7(2VOJ)
DHA_MYCTU
[Raw transfer]




PYR_A_7(1SAY)
?
[Raw transfer]




2OP_E_9(2VOJ)
DHA_MYCTU
[Raw transfer]




6 PsiBlast_PDB 89.7154%-106 - C3 -2VHX - DHA_MYCTU -
114 HHSearch 89.6355%-109 - C3 -1PJC 10.1 ?
11 PsiBlast_PDB 89.0956%-108 - C3 -1PJC 10.1 ?
10 PsiBlast_PDB 88.9856%-104 - C3 -1SAY 3.6 ?
134 Fugue 88.9355%-109 - C3 -1PJC 9.4 ?
29 PsiBlast_CBE 88.8954%-107 - C3 -2VHW - DHA_MYCTU -
28 PsiBlast_CBE 88.7554%-105 - C3 -2VHW - DHA_MYCTU -
4 PsiBlast_PDB 88.7354%-103 - C3 -4LMP 5.1 ?
9 PsiBlast_PDB 88.7256%-104 - C3 -1PJB - ? -
5 PsiBlast_PDB 88.6854%-105 - C3 -2VHW - DHA_MYCTU -
30 PsiBlast_CBE 88.5354%-105 - C3 -2VHW - DHA_MYCTU -
31 PsiBlast_CBE 88.3354%-101 - C3 -2VHV 10.4 DHA_MYCTU
26 PsiBlast_CBE 87.8454%-101 - C3 -2VHW - DHA_MYCTU -
7 PsiBlast_PDB 87.7254%-102 - C3 -2VHZ 11.1 DHA_MYCTU
24 PsiBlast_CBE 87.5254%-102 - C3 -2VHX - DHA_MYCTU -
8 PsiBlast_PDB 87.4454%-100 - C3 -2VHV 10.6 DHA_MYCTU
27 PsiBlast_CBE 87.3554%-101 - C3 -2VHW - DHA_MYCTU -
25 PsiBlast_CBE 87.3454%-101 - C3 -2VHX - DHA_MYCTU -
23 PsiBlast_CBE 86.9554%-101 - C3 -2VHZ 11.2 DHA_MYCTU
2 PsiBlast_PDB 85.8054% -99 - C3 -2VOE - DHA_MYCTU -
22 PsiBlast_CBE 85.7854% -95 - C3 -2VOJ 10.8 DHA_MYCTU
21 PsiBlast_CBE 85.4854% -95 - C3 -2VOJ 10.5 DHA_MYCTU
3 PsiBlast_PDB 85.1854% -95 * C3 *2VOJ 5.8 DHA_MYCTU
139 Fugue 64.4558%-130 - C3 -1PJC 9.4 ?
137 Fugue 64.4558%-130 - C3 -1PJC 9.4 ?
55 PsiBlast_CBE 53.4531% -93 - C3 -2FSV 2.7 PNTAA_RHORT
54 PsiBlast_CBE 52.5531% -97 - C3 -2FSV 3.2 PNTAA_RHORT
52 PsiBlast_CBE 52.4231% -94 - C3 -1NM5 2.8 PNTAA_RHORT
50 PsiBlast_CBE 51.7231% -93 - C3 -1PTJ 3.0 PNTAA_RHORT