@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo1588: (2016-03-26 )
MKHVFPTYKRFPIDLVNGTGTVVTDKNGKTYLDFTSGIAVCNLGHCPTNVAEAVQQQLGNIWHTSNLYECALQDSVAELIADGKERLVFFCNSGTESNEAALKLARKYTGKEKIITFEKSFHGRTFGSMSATGQAKIHQGFGELVPGFTYVPYNDIEAFRAEIDENTAAVMLEVIQAEGGVIPANAAFLLEVQLLCKKMGALLIIDEVQTGLGRTGTLYGFEQIGLDPDIFTLAKGLGNGLPIGAMVGKSDLISAFGPGSHGSTFGGNKLALAAAKEILLTMKQTGFLEEVNAKADYFRNLLEANLEVLDNVSDIRGGGFLIGIELENAAEPVITELRDKGLLILTAGTNVLRILPPLTVSYAEIDQAIYLLKSVLENQLIGSEEG

Atome Classification :

(49 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

P00_B_26(4JEX)
ARGD_SALTY
[Raw transfer]




P00_B_19(4JEW)
ARGD_SALTY
[Raw transfer]




P00_B_18(4JEZ)
ARGD_SALTY
[Raw transfer]




PLP_A_3(2ORD)
ARGD_THEMA
[Raw transfer]




POI_D_4(1WKG)
ARGD_THET8
[Raw transfer]




PFM_A_5(2OAT)
OAT_HUMAN
[Raw transfer]




PLP_B_9(4JF1)
ARGD_SALTY
[Raw transfer]




PPE_D_4(1WKH)
ARGD_THET8
[Raw transfer]




PLP_B_13(4JEY)
ARGD_SALTY
[Raw transfer]




PLP_A_3(4NOG)
?
[Raw transfer]




PLP_B_5(4NOG)
?
[Raw transfer]




PLP_A_3(1VEF)
ARGD_THET8
[Raw transfer]




PLP_B_4(1VEF)
ARGD_THET8
[Raw transfer]




PLP_A_3(4ZWM)
?
[Raw transfer]




PLP_A_3(2EO5)
?
[Raw transfer]




PLP_B_6(2BYJ)
OAT_HUMAN
[Raw transfer]




PLP_B_10(4ZWM)
?
[Raw transfer]




PLP_B_4(2PB0)
ARGD_SALTY
[Raw transfer]




PLP_C_7(1OAT)
OAT_HUMAN
[Raw transfer]




PLP_B_7(4ZLV)
?
[Raw transfer]




PLP_A_5(2BYJ)
OAT_HUMAN
[Raw transfer]




PLP_A_3(4ZLV)
?
[Raw transfer]




PLP_A_5(1OAT)
OAT_HUMAN
[Raw transfer]




PLP_B_6(4PPM)
?
[Raw transfer]




PLP_A_5(2BYL)
OAT_HUMAN
[Raw transfer]




PLP_C_7(2BYL)
OAT_HUMAN
[Raw transfer]




PLP_A_4(4PPM)
?
[Raw transfer]




PLP_A_5(1ZOD)
DGDA_BURCE
[Raw transfer]




PLP_B_6(1OAT)
OAT_HUMAN
[Raw transfer]




PLP_B_6(2BYL)
OAT_HUMAN
[Raw transfer]




PLP_C_7(2BYJ)
OAT_HUMAN
[Raw transfer]




PLP_A_3(2EH6)
ARGD_AQUAE
[Raw transfer]




EDO_A_7(4JEY)
ARGD_SALTY
[Raw transfer]




EDO_A_6(4JEW)
ARGD_SALTY
[Raw transfer]




EDO_A_5(2PB2)
ARGD_SALTY
[Raw transfer]




EDO_A_7(4JEZ)
ARGD_SALTY
[Raw transfer]




EDO_B_12(4JF1)
ARGD_SALTY
[Raw transfer]




EDO_A_4(4JEX)
ARGD_SALTY
[Raw transfer]




2 PsiBlast_PDB 96.3245%-104 - C1 -2E54 - ARGD_THEMA -
3 PsiBlast_PDB 95.8845%-109 - C1 -2ORD - ARGD_THEMA -
21 PsiBlast_CBE 95.3445%-109 - C1 -2EH6 - ARGD_AQUAE -
1 PsiBlast_PDB 94.9045%-110 - C1 -2EH6 - ARGD_AQUAE -
106 HHSearch 93.3046%-105 - C1 -2ORD 4.6 ARGD_THEMA
121 HHSearch 90.6445%-104 - C1 -2EH6 3.0 ARGD_AQUAE
105 HHSearch 87.4639%-102 - C1 -3NX3 - ARGD_CAMJE -
40 PsiBlast_CBE 83.0838%-103 - C1 -1VEF 2.7 ARGD_THET8
19 PsiBlast_PDB 82.7138% -96 - C1 -3NX3 - ARGD_CAMJE -
16 PsiBlast_PDB 82.6938%-102 - C1 -1VEF - ARGD_THET8 -
38 PsiBlast_CBE 82.3538% -99 - C1 -1WKH 6.5 ARGD_THET8
103 HHSearch 82.2339%-102 * C1 *1VEF 2.6 ARGD_THET8
18 PsiBlast_PDB 82.0438%-101 - C1 -1WKH - ARGD_THET8 -
17 PsiBlast_PDB 81.1338%-103 - C1 -1WKG - ARGD_THET8 -
32 PsiBlast_CBE 79.9640% -86 - C1 -4ADC - ASTC_ECOLI -
74 PsiBlast_CBE 79.8933%-103 - C1 -4ZLV 3.4 ?
12 PsiBlast_PDB 79.8140% -87 - C1 -4ADB - ASTC_ECOLI -
80 PsiBlast_CBE 79.6933%-104 - C1 -2BYJ 3.1 OAT_HUMAN
90 PsiBlast_CBE 79.4233%-106 - C1 -1GBN - OAT_HUMAN -
34 PsiBlast_CBE 79.2640% -88 - C1 -4ADC - ASTC_ECOLI -
39 PsiBlast_CBE 79.0138% -98 - C1 -1WKG 5.7 ARGD_THET8
94 PsiBlast_CBE 78.8833%-105 - C1 -1OAT 3.1 OAT_HUMAN
79 PsiBlast_CBE 78.6033%-104 - C1 -2BYJ 3.6 OAT_HUMAN
78 PsiBlast_CBE 78.4233%-104 - C1 -2BYJ 3.3 OAT_HUMAN
75 PsiBlast_CBE 78.2933%-101 - C1 -4ZLV 3.1 ?
93 PsiBlast_CBE 78.2133%-104 - C1 -2OAT 7.2 OAT_HUMAN
73 PsiBlast_CBE 78.1433%-101 - C1 -4ZWM 4.6 ?
72 PsiBlast_CBE 78.1133% -99 - C1 -4ZWM 4.4 ?
96 PsiBlast_CBE 77.6233%-105 - C1 -1OAT 3.2 OAT_HUMAN
95 PsiBlast_CBE 77.4933%-103 - C1 -1OAT 3.1 OAT_HUMAN
70 PsiBlast_CBE 77.1333%-100 - C1 -4NOG 5.1 ?
99 PsiBlast_CBE 76.7133%-104 - C1 -2BYL 3.0 OAT_HUMAN
28 PsiBlast_CBE 76.5141% -84 - C1 -4JEY 4.4 ARGD_SALTY
97 PsiBlast_CBE 76.4333%-106 - C1 -2BYL 3.1 OAT_HUMAN
71 PsiBlast_CBE 76.2433%-101 - C1 -4NOG 5.2 ?
22 PsiBlast_CBE 75.9942% -83 - C1 -4JEW 5.6 ARGD_SALTY
98 PsiBlast_CBE 75.6933%-103 - C1 -2BYL 3.1 OAT_HUMAN
24 PsiBlast_CBE 75.3142% -83 - C1 -2PB0 3.5 ARGD_SALTY
10 PsiBlast_PDB 74.7441% -87 - C1 -4JEZ 2.6 ARGD_SALTY
23 PsiBlast_CBE 74.4942% -83 - C1 -2PB2 2.7 ARGD_SALTY
9 PsiBlast_PDB 74.4341% -86 - C1 -4JF1 2.7 ARGD_SALTY
25 PsiBlast_CBE 74.3142% -86 - C1 -4JEX 5.6 ARGD_SALTY
26 PsiBlast_CBE 74.3041% -82 - C1 -4JF1 4.2 ARGD_SALTY
8 PsiBlast_PDB 73.5342% -86 - C1 -4JEX 3.0 ARGD_SALTY
27 PsiBlast_CBE 72.7641% -83 - C1 -4JEZ 3.1 ARGD_SALTY
49 PsiBlast_CBE 67.1435% -97 - C1 -2EO5 2.7 ?
76 PsiBlast_CBE 66.7434% -91 - C1 -4PPM 4.2 ?
77 PsiBlast_CBE 64.1134% -90 - C1 -4PPM 2.4 ?
120 HHSearch 58.9431% -83 - C1 -1ZOD 2.9 DGDA_BURCE