@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo1598: (2016-03-26 )
MNIIDELEWRGAIYQQTDEEGLRKWVEEKQISLYCGIDPSGDSMHIGHLIPFMILRRFQNAGHRPIILVGGATGTIGDPSGKKEERKLQSMEQISKNVESLRVQLGKIFDFEGNSAASMVNNYDWTKDVSILDFLRDYGKEFNVNTMLSKDIVASRLEVGISFTEFAYQILQAMDFNHLYEFNDCRLQIGGSDQWGNITAGLDLIRKKQGENAKAFGLTIPLLTKADGTKFGKSEGGAIWLNPEKTTPYEFYQFWINTDDRDVVKYLKYFTFLTEAEIDELAKQVETEPHLRAAQKTLAAEMTKFVHSEEALEQALKISKALFSGDVKALTADEIEQGFKDVPTFVAEDSEANLVDWLVTLGIEPSKRQAREDVGNGAIYINGERQQDLEKIMDASDRIENKFTIVRRGKKKYFLVSYK

Atome Classification :

(30 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

YSA_H_8(1VBM)
SYY_ECOLI
[Raw transfer]



YSA_C_3(1VBN)
SYY_ECOLI
[Raw transfer]



YSA_D_4(1VBN)
SYY_ECOLI
[Raw transfer]



YSA_G_7(1VBM)
SYY_ECOLI
[Raw transfer]



YSA_B_4(2PID)
SYYM_HUMAN
[Raw transfer]



YSA_A_3(2PID)
SYYM_HUMAN
[Raw transfer]



YSA_A_3(2PID)
SYYM_HUMAN
[Raw transfer]



TYA_C_3(3TS1)
SYY_GEOSE
[Raw transfer]



AZY_A_2(2YXN)
SYY_ECOLI
[Raw transfer]



AZY_A_2(2YXN)
SYY_ECOLI
[Raw transfer]



TYR_E_5(1X8X)
SYY_ECOLI
[Raw transfer]



TYR_S_3(1TYD)
SYY_GEOSE
[Raw transfer]



TYR_S_3(1TYB)
SYY_GEOSE
[Raw transfer]



TYR_S_3(1TYA)
SYY_GEOSE
[Raw transfer]



TYR_C_3(4TS1)
SYY_GEOSE
[Raw transfer]



TYR_C_3(1WQ4)
SYY_ECOLI
[Raw transfer]



TYR_C_3(1Y42)
SYYM_NEUCR
[Raw transfer]



IYR_C_3(1WQ3)
SYY_ECOLI
[Raw transfer]



TYR_D_4(4TS1)
SYY_GEOSE
[Raw transfer]



TYR_C_3(1Y42)
SYYM_NEUCR
[Raw transfer]



383_C_3(1JII)
SYY_STAAE
[Raw transfer]



545_C_3(1JIK)
SYY_STAAE
[Raw transfer]



485_C_3(1JIL)
SYY_STAAE
[Raw transfer]



629_C_3(1JIJ)
SYY_STAAE
[Raw transfer]



TYR_X_2(4OJM)
SYYM_NEUCR
[Raw transfer]
96 HHSearch 94.5243% -95 - C4 -2JAN - SYY_MYCTU -
12 PsiBlast_PDB 92.9644% -88 - C4 -2JAN - SYY_MYCTU -
10 PsiBlast_PDB 89.3062% -88 - C4 -1TYB 2.8 SYY_GEOSE
8 PsiBlast_PDB 88.9662% -90 - C4 -1TYA 2.8 SYY_GEOSE
95 HHSearch 88.9563% -88 * C4 *2TS1 - SYY_GEOSE -
9 PsiBlast_PDB 88.9162% -90 - C4 -1TYD 3.2 SYY_GEOSE
2 PsiBlast_PDB 88.7962% -90 - C4 -3TS1 6.5 SYY_GEOSE
7 PsiBlast_PDB 88.4562% -89 - C4 -1TYC - SYY_GEOSE -
1 PsiBlast_PDB 88.4262% -88 - C4 -2TS1 - SYY_GEOSE -
6 PsiBlast_PDB 88.4159% -91 - C4 -1JIL 6.2 SYY_STAAE
11 PsiBlast_PDB 87.5861% -87 - C4 -4TS1 2.9 SYY_GEOSE
21 PsiBlast_CBE 87.3861% -89 - C4 -4TS1 2.9 SYY_GEOSE
4 PsiBlast_PDB 86.5159% -91 - C4 -1JIJ 3.2 SYY_STAAE
5 PsiBlast_PDB 85.8859% -82 - C4 -1JIK 5.3 SYY_STAAE
3 PsiBlast_PDB 84.6559% -87 - C4 -1JII 3.8 SYY_STAAE
13 PsiBlast_PDB 84.4651% -85 - C4 -1X8X 3.2 SYY_ECOLI
22 PsiBlast_CBE 84.2551% -89 - C4 -1VBM 7.5 SYY_ECOLI
15 PsiBlast_PDB 84.2551% -85 - C4 -1WQ4 2.8 SYY_ECOLI
17 PsiBlast_PDB 84.2151% -85 - C4 -2YXN 2.6 SYY_ECOLI
16 PsiBlast_PDB 84.2151% -85 - C4 -1WQ3 3.4 SYY_ECOLI
18 PsiBlast_PDB 83.9451% -89 - C4 -1VBN 7.0 SYY_ECOLI
14 PsiBlast_PDB 83.8051% -87 - C4 -1VBM 7.5 SYY_ECOLI
23 PsiBlast_CBE 83.4051% -87 - C4 -1VBN 6.6 SYY_ECOLI
100 HHSearch 80.6048% -84 - C4 -2YXN 2.6 SYY_ECOLI
99 HHSearch 79.1141% -89 - C4 -2PID 7.9 SYYM_HUMAN
25 PsiBlast_CBE 74.9943% -93 - C4 -2PID 7.5 SYYM_HUMAN
19 PsiBlast_PDB 74.8343% -90 - C4 -2PID 7.9 SYYM_HUMAN
98 HHSearch 74.3734% -83 - C4 -1Y42 3.2 SYYM_NEUCR
26 PsiBlast_CBE 74.1932% -81 - C4 -4OJM 3.3 SYYM_NEUCR
27 PsiBlast_CBE 72.1932% -81 - C4 -1Y42 3.2 SYYM_NEUCR