@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo1599: (2016-03-26 )
MNVTIYDVAREANVSMATVSRVVNGNPNVKPVTRKKVLDVINQLGYRPNAVARGLASKRTTTVGVIIPDISNVFYAELARGIEDIATMYKYNIILSNSDENEDKELQVLNTLLGKQVDGIIYMGERISEQLQEEFDRSPAPVVLAGAVDMENKFASVNIDYKQATKEAVKRFVDNGHKQIAFVSGSLNEPVNREMKLAGYKEALEEAGISYQEDYIIEAKYNYNAGVKVWAELSALSKKPNAVVVADDELAIGILNAALDAGIKVPEDLEVMTSNNTKLTLMSRPQLSTIVQPLYDIGAVAMRLLTKLMTSEEVDEKTVILPHSEKLRGTTKEKK

Atome Classification :

(30 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NACID_B_6(3OQO)
CCPA_BACSU
[Raw transfer]

-

CHAIN_T_2(1ZVV)
CCPA_BACSU
[Raw transfer]

-

NACID_E_3(1RZR)
CCPA_BACME
[Raw transfer]

-

NACID_E_5(3OQN)
CCPA_BACSU
[Raw transfer]

-

NACID_E_5(3OQN)
CCPA_BACSU
[Raw transfer]

-

NACID_B_6(3OQO)
CCPA_BACSU
[Raw transfer]

-

NACID_M_1(1QP7)
PURR_ECOLI
[Raw transfer]

-

NACID_E_5(3OQM)
CCPA_BACSU
[Raw transfer]

-

NACID_B_1(2PUA)
PURR_ECOLI
[Raw transfer]

-

CHAIN_O_1(1ZVV)
CCPA_BACSU
[Raw transfer]

-

NACID_M_1(1QQB)
PURR_ECOLI
[Raw transfer]

-

NACID_B_1(2PUC)
PURR_ECOLI
[Raw transfer]

-

NACID_E_5(3OQM)
CCPA_BACSU
[Raw transfer]

-

NACID_B_1(1JFT)
PURR_ECOLI
[Raw transfer]

-

CHAIN_R_3(1ZVV)
CCPA_BACSU
[Raw transfer]

-

NACID_B_1(2PUE)
PURR_ECOLI
[Raw transfer]

-

NACID_M_1(1QQA)
PURR_ECOLI
[Raw transfer]

-

NACID_B_1(1BDH)
PURR_ECOLI
[Raw transfer]

-

NACID_B_1(2PUB)
PURR_ECOLI
[Raw transfer]

-

NACID_B_1(2PUD)
PURR_ECOLI
[Raw transfer]

-

21 PsiBlast_CBE 97.5765% -98 - C3 -3OQO 5.6 CCPA_BACSU
2 PsiBlast_PDB 97.0965% -98 - C3 -3OQM 7.2 CCPA_BACSU
23 PsiBlast_CBE 96.8965% -97 - C3 -3OQM 5.4 CCPA_BACSU
3 PsiBlast_PDB 96.5065%-102 - C3 -3OQN 5.3 CCPA_BACSU
1 PsiBlast_PDB 96.3265% -98 - C3 -3OQO 5.1 CCPA_BACSU
22 PsiBlast_CBE 96.2565% -97 - C3 -3OQN 5.8 CCPA_BACSU
5 PsiBlast_PDB 94.4062% -99 - C3 -1ZVV 3.1 CCPA_BACSU
6 PsiBlast_PDB 94.0260% -96 - C3 -1RZR 4.6 CCPA_BACME
24 PsiBlast_CBE 93.8862% -95 - C3 -1ZVV 4.8 CCPA_BACSU
25 PsiBlast_CBE 93.7062% -95 - C3 -1ZVV 4.8 CCPA_BACSU
60 HHSearch 90.6263% -90 - C3 -2HSG - CCPA_BACME -
4 PsiBlast_PDB 90.4862% -88 - C3 -2HSG - CCPA_BACME -
7 PsiBlast_PDB 86.6460% -98 - C3 -2FEP - CCPA_BACSU -
73 HHSearch 86.4660%-100 - C3 -2FEP - CCPA_BACSU -
9 PsiBlast_PDB 86.0457% -97 - C3 -2NZU - CCPA_BACME -
10 PsiBlast_PDB 85.5857% -99 - C3 -2NZV - CCPA_BACME -
26 PsiBlast_CBE 84.1557% -92 - C3 -1SXG - CCPA_BACME -
8 PsiBlast_PDB 83.5557% -89 - C3 -1SXG - CCPA_BACME -
14 PsiBlast_PDB 83.1956% -92 - C3 -1SXI - CCPA_BACME -
11 PsiBlast_PDB 82.9057% -97 - C3 -2OEN - CCPA_BACME -
19 PsiBlast_PDB 72.2831% -91 - C3 -1JFT 2.9 PURR_ECOLI
32 PsiBlast_CBE 71.1031% -89 - C3 -2PUC 3.1 PURR_ECOLI
31 PsiBlast_CBE 70.5631% -88 - C3 -2PUD 3.4 PURR_ECOLI
34 PsiBlast_CBE 70.4031% -87 - C3 -2PUA 3.1 PURR_ECOLI
16 PsiBlast_PDB 70.2531% -90 - C3 -1QP7 3.9 PURR_ECOLI
33 PsiBlast_CBE 70.0731% -90 - C3 -2PUB 4.5 PURR_ECOLI
15 PsiBlast_PDB 70.0731% -91 - C3 -1BDH 3.3 PURR_ECOLI
18 PsiBlast_PDB 69.9331% -87 - C3 -1QQB 4.2 PURR_ECOLI
20 PsiBlast_PDB 69.4130% -88 - C3 -2PUE 2.8 PURR_ECOLI
17 PsiBlast_PDB 69.0931% -87 - C3 -1QQA 3.9 PURR_ECOLI