@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo1600: (2016-03-26 )
MVNTNLEELRTQVDQLNIDLLELISKRANLVQEIGKIKGTQGSLRFDPLREREMLNTILAANEGPFEDSTVQKLFKEIFKAGLELQEEDHSKALLVSRKNKKEDTIVTVKGLPIGNGEPVFVFGPCSVESYEQVAAVAESIKAKGLKLIRGGAFKPRTSPYDFQGLGLEGLKILKRVSDEYGLGVISEIVTPADIEVALDYVDVIQIGARNMQNFELLKAAGRVDKPILLKRGLSATIEEFIGAAEYIMSQGNGKIILCERGIRTYEKATRNTLDISAVPILKKETHLPVMVDVTHSTGRKDLLLPCAKAALAIEADGVMAEVHPDPAVALSDSAQQMDIPEFEEFWNAILASNLVPHKIK

Atome Classification :

(26 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

PEP_A_4(3TFC)
?
[Raw transfer]




PEP_B_7(3TFC)
?
[Raw transfer]




E4P_B_9(1RZM)
AROF_THEMA
[Raw transfer]




PEP_C_11(1VS1)
?
[Raw transfer]




PEP_B_10(1VS1)
?
[Raw transfer]




PEP_A_9(1VS1)
?
[Raw transfer]




PEP_D_12(1VS1)
?
[Raw transfer]




PEP_A_9(1VS1)
?
[Raw transfer]




PEP_B_7(1ZCO)
?
[Raw transfer]




PEP_A_6(1ZCO)
?
[Raw transfer]




E4P_A_8(1RZM)
AROF_THEMA
[Raw transfer]




E4P_A_8(1RZM)
AROF_THEMA
[Raw transfer]




2 PsiBlast_PDB 96.47100%-108 - C3 -3TFC 4.9 ?
1 PsiBlast_PDB 95.39100%-105 - C3 -3NVT - ? -
85 Fugue 95.3899%-105 - C3 -3NVT - ? -
95 HHSearch 94.4198%-107 - C3 -3NVT - ? -
21 PsiBlast_CBE 93.86100%-110 - C3 -3TFC 5.1 ?
22 PsiBlast_CBE 93.75100%-109 - C3 -3NVT - ? -
33 PsiBlast_CBE 74.1254% -98 - C3 -1RZM 3.2 AROF_THEMA
4 PsiBlast_PDB 73.6554% -98 - C3 -1RZM 2.3 AROF_THEMA
32 PsiBlast_CBE 73.3054% -97 - C3 -3PG9 - AROF_THEMA -
41 PsiBlast_CBE 72.1252% -97 - C3 -1VS1 5.2 ?
5 PsiBlast_PDB 72.1254% -97 - C3 -3PG9 - AROF_THEMA -
30 PsiBlast_CBE 72.0654% -95 - C3 -3PG9 - AROF_THEMA -
26 PsiBlast_CBE 71.9154% -98 - C3 -3PG9 - AROF_THEMA -
28 PsiBlast_CBE 71.8554% -94 - C3 -3PG9 - AROF_THEMA -
7 PsiBlast_PDB 71.7153% -94 - C3 -4C1K - ? -
29 PsiBlast_CBE 71.6254% -93 - C3 -3PG9 - AROF_THEMA -
31 PsiBlast_CBE 71.6054% -96 - C3 -3PG9 - AROF_THEMA -
103 HHSearch 71.4450% -92 - C3 -1VR6 - AROF_THEMA -
42 PsiBlast_CBE 71.4152% -96 - C3 -1VS1 4.6 ?
40 PsiBlast_CBE 71.4053% -93 - C3 -4C1L - ? -
86 Fugue 71.3744% -78 - C3 -1RZM 2.3 AROF_THEMA
39 PsiBlast_CBE 71.3653% -96 - C3 -1ZCO 4.4 ?
43 PsiBlast_CBE 71.0552% -98 - C3 -1VS1 5.8 ?
10 PsiBlast_PDB 70.9052% -96 - C3 -1VS1 5.1 ?
8 PsiBlast_PDB 70.2453% -91 - C3 -1ZCO 3.3 ?
96 HHSearch 69.8949% -96 - C3 -1VS1 4.2 ?