@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo1619: (2016-03-26 )
MKVLVNNHLVEREDATVDIEDRGYQFGDGVYEVVRLYNGKFFTYNEHIDRLYASAAKIDLVIPYSKEELRELLEKLVAENNINTGNVYLQVTRGVQNPRNHVIPDDFPLEGVLTAAAREVPRNERQFVEGGTAITEEDVRWLRCDIKSLNLLGNILAKNKAHQQNALEAILHRGEQVTECSASNVSIIKDGVLWTHAADNLILNGITRQVIIDVAKKNGIPVKEADFTLTDLREADEVFISSTTIEITPITHIDGVQVADGKRGPITAQLHQYFVEEITRACGELVFAK

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

PSZ_A_3(3LQS)
DAAA_BACYM
[Raw transfer]




PSZ_B_4(3LQS)
DAAA_BACYM
[Raw transfer]




DCS_A_3(2DAA)
DAAA_BACYM
[Raw transfer]




DCS_B_4(2DAA)
DAAA_BACYM
[Raw transfer]




PMP_B_4(1A0G)
DAAA_BACYM
[Raw transfer]




PLP_A_5(4DAA)
DAAA_BACYM
[Raw transfer]




PDD_B_4(3DAA)
DAAA_BACYM
[Raw transfer]




PLP_A_3(1DAA)
DAAA_BACYM
[Raw transfer]




PMP_A_3(1A0G)
DAAA_BACYM
[Raw transfer]




PLP_B_4(1DAA)
DAAA_BACYM
[Raw transfer]




PDD_A_3(3DAA)
DAAA_BACYM
[Raw transfer]




PDD_A_3(3DAA)
DAAA_BACYM
[Raw transfer]




PLP_A_3(2DAB)
DAAA_BACYM
[Raw transfer]




PLP_B_6(4DAA)
DAAA_BACYM
[Raw transfer]




PLP_A_5(1G2W)
DAAA_BACYM
[Raw transfer]




PLP_B_6(1G2W)
DAAA_BACYM
[Raw transfer]




PLP_B_4(2DAB)
DAAA_BACYM
[Raw transfer]




PLP_B_4(5DAA)
DAAA_BACYM
[Raw transfer]




PLP_A_3(5DAA)
DAAA_BACYM
[Raw transfer]




PLP_A_3(5DAA)
DAAA_BACYM
[Raw transfer]




ACY_B_5(3LQS)
DAAA_BACYM
[Raw transfer]




24 PsiBlast_CBE 99.1652% -92 - C8 -4DAA 4.1 DAAA_BACYM
6 PsiBlast_PDB 98.3951% -89 - C8 -1G2W 3.9 DAAA_BACYM
1 PsiBlast_PDB 98.3652% -88 - C8 -3LQS 6.3 DAAA_BACYM
27 PsiBlast_CBE 98.2752% -92 - C8 -5DAA 4.1 DAAA_BACYM
21 PsiBlast_CBE 98.2752% -89 - C8 -3LQS 6.4 DAAA_BACYM
5 PsiBlast_PDB 98.1352% -91 - C8 -4DAA 4.1 DAAA_BACYM
25 PsiBlast_CBE 98.1052% -89 - C8 -3DAA 6.1 DAAA_BACYM
7 PsiBlast_PDB 97.9852% -92 - C8 -5DAA 4.0 DAAA_BACYM
2 PsiBlast_PDB 97.6252% -89 - C8 -1DAA 6.1 DAAA_BACYM
49 HHSearch 97.5952% -84 * C8 *3DAA 6.2 DAAA_BACYM
23 PsiBlast_CBE 97.4952% -88 - C8 -1DAA 5.3 DAAA_BACYM
26 PsiBlast_CBE 97.4851% -87 - C8 -1G2W 4.3 DAAA_BACYM
3 PsiBlast_PDB 97.4852% -92 - C8 -2DAA 6.9 DAAA_BACYM
22 PsiBlast_CBE 97.3952% -89 - C8 -2DAA 6.9 DAAA_BACYM
4 PsiBlast_PDB 97.3952% -87 - C8 -3DAA 6.2 DAAA_BACYM
8 PsiBlast_PDB 96.6751% -87 - C8 -1A0G 5.9 DAAA_BACYM
9 PsiBlast_PDB 96.6251% -86 - C8 -2DAB 5.4 DAAA_BACYM
40 Fugue 96.5750% -92 - C8 -5DAA 4.0 DAAA_BACYM
29 PsiBlast_CBE 96.1451% -87 - C8 -1A0G 4.9 DAAA_BACYM
28 PsiBlast_CBE 95.8651% -89 - C8 -2DAB 4.7 DAAA_BACYM