@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo1628: (2016-03-27 )
MTYQAPDENGFYGKFGGRFVPETLMKAVKELDEAYQASKTDPAFQKELNYYLKEYVGRETPLYFAEQLTAHAGGAKIYLKREDLNHTGAHKINNTIGQALLARQMGKQKVVAETGAGQHGVATATVAALFNMKCTIFMGEEDVKRQSLNVFRMELLGAKVVSVKAGSRTLKDAVNEALRFWVANVEDTHYIMGSVLGPHPFPEIVRDYQSVIGIEARKQHLEKEGKLPDAIVACVGGGSNAMGLFYPFVDDASVQMHGVEAAGHGLETEFHAATISKGEIGILHGAMMDVLQDENGQILEAFSISAGLDYPGIGPEHSFFRDLGRAAYHSVTDDEAVEAFQLLCRTEGIIPALESSHAISYAVKLASKMRPEESMVVCLSGRGDKDVNQLKERLEGQTND

Atome Classification :

(66 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

1D0_B_5(4HPJ)
TRPB_SALTY
[Raw transfer]




AQ3_B_8(4KKX)
TRPB_SALTY
[Raw transfer]




7MN_B_4(3PR2)
TRPB_SALTY
[Raw transfer]




PLS_B_4(1KFE)
TRPB_SALTY
[Raw transfer]




0JO_B_4(4HN4)
TRPB_SALTY
[Raw transfer]




0JO_B_8(4HPX)
TRPB_SALTY
[Raw transfer]




PLS_B_4(1KFJ)
TRPB_SALTY
[Raw transfer]




PLS_B_5(2TRS)
TRPB_SALTY
[Raw transfer]




PLS_B_4(2CLL)
TRPB_SALTY
[Raw transfer]




PLS_B_5(2TSY)
TRPB_SALTY
[Raw transfer]




P1T_B_4(2J9X)
TRPB_SALTY
[Raw transfer]




PLT_B_4(2TYS)
TRPB_SALTY
[Raw transfer]




FOO_B_3(2J9Y)
TRPB_SALTY
[Raw transfer]




PLS_B_9(1BEU)
TRPB_SALTY
[Raw transfer]




GOL_A_7(4NEG)
TRPB_BACAN
[Raw transfer]




PLT_B_4(2TYS)
TRPB_SALTY
[Raw transfer]




PLP_B_5(1A5S)
TRPB_SALTY
[Raw transfer]




PLP_B_5(1UBS)
TRPB_SALTY
[Raw transfer]




PLP_B_5(1KFC)
TRPB_SALTY
[Raw transfer]




PLP_B_4(1K8X)
TRPB_SALTY
[Raw transfer]




PLP_B_9(1A5B)
TRPB_SALTY
[Raw transfer]




PLP_B_7(1A5A)
TRPB_SALTY
[Raw transfer]




PLP_B_5(2RH9)
TRPB_SALTY
[Raw transfer]




PLP_B_4(1KFK)
TRPB_SALTY
[Raw transfer]




PLP_B_5(1K8Z)
TRPB_SALTY
[Raw transfer]




PLP_B_5(1K8Y)
TRPB_SALTY
[Raw transfer]




PLP_B_5(1TJP)
TRPB_SALTY
[Raw transfer]




PLP_B_4(1KFB)
TRPB_SALTY
[Raw transfer]




PLP_B_5(1K7E)
TRPB_SALTY
[Raw transfer]




PLP_A_4(2DH5)
TRPB_ECOLI
[Raw transfer]




PLP_B_5(1K3U)
TRPB_SALTY
[Raw transfer]




PLP_B_12(4HT3)
TRPB_SALTY
[Raw transfer]




PLP_B_5(1CX9)
TRPB_SALTY
[Raw transfer]




PLP_B_7(1K7F)
TRPB_SALTY
[Raw transfer]




PLP_B_5(2CLH)
TRPB_SALTY
[Raw transfer]




PLP_B_5(1FUY)
TRPB_SALTY
[Raw transfer]




PLP_B_4(1K7X)
TRPB_SALTY
[Raw transfer]




PLP_B_4(1QOQ)
TRPB_SALTY
[Raw transfer]




PLP_B_4(1BKS)
TRPB_SALTY
[Raw transfer]




PLP_B_4(1C29)
TRPB_SALTY
[Raw transfer]




PLP_B_4(1QOP)
TRPB_SALTY
[Raw transfer]




PLP_B_6(1TTQ)
TRPB_SALTY
[Raw transfer]




PLP_B_5(2CLE)
TRPB_SALTY
[Raw transfer]




PLP_B_4(1WBJ)
TRPB_SALTY
[Raw transfer]




PLP_B_4(2CLK)
TRPB_SALTY
[Raw transfer]




PLP_B_4(1A50)
TRPB_SALTY
[Raw transfer]




PLP_B_5(1TTP)
TRPB_SALTY
[Raw transfer]




PLP_B_5(2CLI)
TRPB_SALTY
[Raw transfer]




PLP_B_4(1C9D)
TRPB_SALTY
[Raw transfer]




PLP_B_5(1C8V)
TRPB_SALTY
[Raw transfer]




PLP_B_4(2WSY)
TRPB_SALTY
[Raw transfer]




PLP_B_4(1CW2)
TRPB_SALTY
[Raw transfer]




EDO_B_13(4HT3)
TRPB_SALTY
[Raw transfer]




F6F_B_4(2CLF)
TRPB_SALTY
[Raw transfer]




PLP_B_7(3CEP)
TRPB_SALTY
[Raw transfer]




95 HHSearch 95.5461% -74 - C4 -1X1Q - TRPB_THET2 -
4 PsiBlast_PDB 94.2259% -73 - C4 -1X1Q - TRPB_THET2 -
22 PsiBlast_CBE 92.9462% -74 - C4 -1WDW - TRPB1_PYRFU -
27 PsiBlast_CBE 92.6862% -71 - C4 -1V8Z - TRPB1_PYRFU -
24 PsiBlast_CBE 92.5762% -74 - C4 -1WDW - TRPB1_PYRFU -
25 PsiBlast_CBE 92.5362% -74 - C4 -1WDW - TRPB1_PYRFU -
21 PsiBlast_CBE 92.4962% -74 - C4 -1WDW - TRPB1_PYRFU -
28 PsiBlast_CBE 92.4162% -72 - C4 -1V8Z - TRPB1_PYRFU -
26 PsiBlast_CBE 92.3962% -72 - C4 -1V8Z - TRPB1_PYRFU -
2 PsiBlast_PDB 92.2662% -73 - C4 -1WDW - TRPB1_PYRFU -
23 PsiBlast_CBE 92.1962% -74 - C4 -1WDW - TRPB1_PYRFU -
3 PsiBlast_PDB 91.9662% -70 - C4 -1V8Z - TRPB1_PYRFU -
36 PsiBlast_CBE 90.7453% -67 - C4 -1KFB 4.9 TRPB_SALTY
10 PsiBlast_PDB 90.7053% -64 - C4 -1KFC 5.3 TRPB_SALTY
55 PsiBlast_CBE 90.6953% -68 - C4 -1A5A 5.3 TRPB_SALTY
35 PsiBlast_CBE 90.6853% -64 - C4 -1TJP 4.7 TRPB_SALTY
17 PsiBlast_PDB 90.6853% -66 - C4 -4HT3 4.9 TRPB_SALTY
61 PsiBlast_CBE 90.6553% -68 - C4 -2CLE 5.0 TRPB_SALTY
65 PsiBlast_CBE 90.5852% -68 - C4 -1QOQ 5.6 TRPB_SALTY
1 PsiBlast_PDB 90.5570% -85 - C4 -4NEG 2.1 TRPB_BACAN
13 PsiBlast_PDB 90.5353% -64 - C4 -2RH9 5.1 TRPB_SALTY
64 PsiBlast_CBE 90.4952% -69 - C4 -1FUY 5.6 TRPB_SALTY
8 PsiBlast_PDB 90.4953% -65 - C4 -1KFE 8.5 TRPB_SALTY
43 PsiBlast_CBE 90.4252% -69 - C4 -2DH5 4.5 TRPB_ECOLI
15 PsiBlast_PDB 90.3453% -62 - C4 -4HN4 8.7 TRPB_SALTY
59 PsiBlast_CBE 90.3353% -65 - C4 -2CLH 4.3 TRPB_SALTY
20 PsiBlast_PDB 90.2053% -65 - C4 -1K3U 4.5 TRPB_SALTY
33 PsiBlast_CBE 90.1953% -66 - C4 -2CLI 4.7 TRPB_SALTY
31 PsiBlast_CBE 90.1753% -64 - C4 -2CLL 8.5 TRPB_SALTY
12 PsiBlast_PDB 90.1753% -65 - C4 -1KFK 4.7 TRPB_SALTY
38 PsiBlast_CBE 90.1553% -64 - C4 -1K7E 4.8 TRPB_SALTY
60 PsiBlast_CBE 90.1353% -64 - C4 -2CLF 4.0 TRPB_SALTY
14 PsiBlast_PDB 90.1253% -62 - C4 -4HPX 9.1 TRPB_SALTY
34 PsiBlast_CBE 90.1053% -65 - C4 -1WBJ 5.3 TRPB_SALTY
32 PsiBlast_CBE 90.1053% -65 - C4 -2CLK 5.3 TRPB_SALTY
30 PsiBlast_CBE 90.1053% -60 - C4 -2J9X 7.8 TRPB_SALTY
19 PsiBlast_PDB 90.0153% -65 - C4 -1QOP 5.1 TRPB_SALTY
11 PsiBlast_PDB 90.0053% -64 - C4 -1KFJ 8.4 TRPB_SALTY
53 PsiBlast_CBE 89.9953% -65 - C4 -1BEU 7.0 TRPB_SALTY
9 PsiBlast_PDB 89.9553% -66 - C4 -1K8X 5.3 TRPB_SALTY
16 PsiBlast_PDB 89.8853% -62 - C4 -4HPJ 10.8 TRPB_SALTY
45 PsiBlast_CBE 89.8653% -69 - C4 -1TTP 3.7 TRPB_SALTY
54 PsiBlast_CBE 89.7653% -71 - C4 -1A5B 5.2 TRPB_SALTY
69 PsiBlast_CBE 89.6952% -66 - C4 -1UBS 6.5 TRPB_SALTY
62 PsiBlast_CBE 89.5553% -66 - C4 -1A50 4.3 TRPB_SALTY
51 PsiBlast_CBE 89.4253% -65 - C4 -1BKS 4.5 TRPB_SALTY
46 PsiBlast_CBE 89.3953% -68 - C4 -1CX9 4.5 TRPB_SALTY
29 PsiBlast_CBE 89.3953% -61 - C4 -3CEP 10.3 TRPB_SALTY
18 PsiBlast_PDB 89.3553% -61 - C4 -4KKX 10.2 TRPB_SALTY
63 PsiBlast_CBE 89.3352% -63 - C4 -2J9Y 8.6 TRPB_SALTY
47 PsiBlast_CBE 89.3353% -64 - C4 -1CW2 4.8 TRPB_SALTY
44 PsiBlast_CBE 89.1953% -68 - C4 -1TTQ 4.2 TRPB_SALTY
39 PsiBlast_CBE 89.1453% -66 - C4 -1K8Z 4.9 TRPB_SALTY
52 PsiBlast_CBE 89.1053% -64 - C4 -1A5S 6.7 TRPB_SALTY
7 PsiBlast_PDB 88.9953% -62 - C4 -3PR2 10.8 TRPB_SALTY
49 PsiBlast_CBE 88.9853% -64 - C4 -1C8V 4.8 TRPB_SALTY
41 PsiBlast_CBE 88.9553% -65 - C4 -1K7X 5.0 TRPB_SALTY
50 PsiBlast_CBE 88.8653% -64 - C4 -1C29 4.7 TRPB_SALTY
66 PsiBlast_CBE 88.8552% -61 - C4 -2TYS 10.1 TRPB_SALTY
40 PsiBlast_CBE 88.8553% -64 - C4 -1K8Y 4.9 TRPB_SALTY
48 PsiBlast_CBE 88.8453% -64 - C4 -1C9D 4.4 TRPB_SALTY
68 PsiBlast_CBE 88.7152% -65 * C4 *2TRS 7.2 TRPB_SALTY
67 PsiBlast_CBE 88.2152% -62 - C4 -2TSY 6.9 TRPB_SALTY
37 PsiBlast_CBE 87.7853% -72 - C4 -1K7F 4.3 TRPB_SALTY
56 PsiBlast_CBE 87.0353% -73 - C4 -2WSY 4.6 TRPB_SALTY
85 Fugue 85.1950% -57 - C4 -2TYS 8.3 TRPB_SALTY