@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo1631: (2016-03-27 )
MEILLQKVYDQENLSKEEMNIIATEIFEGRLSKTKMAAFLMALKVKGETAEEMAGIAQAMQQVAIQVAFPAGTAMDNCGTGGDKSNSFNISTTSAFVLAAAGIPVAKHGNRSISSRSGSADVCQELGIDINLRPEDMTYLLEKVGIAFLFAPHVHPNMKYVMDVRKELGTPTIFNLIGPLTNPVHLETQLMGIYRRDLLEQTAEVLGQLGRKRAVVLNGAGFMDEASLAGENHYALYENGEVHLYTLRPEDVGLTSYPLEAITGGDAKENAAILRSVLEGEPGAYLDTVLLNAGFGLFANGKVETVQEGVDLAKDLISSGLAKQKLADLITYQKEVLAK

Atome Classification :

(40 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

6M1_A_5(4N93)
TRPD_MYCTU
[Raw transfer]




6M1_B_13(4N93)
TRPD_MYCTU
[Raw transfer]




PRP_B_8(3R6C)
TRPD_MYCTU
[Raw transfer]




644_A_3(4M0R)
TRPD_MYCTO
[Raw transfer]




6F0_B_14(4OWO)
TRPD_MYCTU
[Raw transfer]




PRP_A_3(3QSA)
TRPD_MYCTU
[Raw transfer]




PRP_A_3(4N5V)
TRPD_MYCTU
[Raw transfer]




PRP_A_3(3R88)
TRPD_MYCTU
[Raw transfer]




PRP_B_9(3QQS)
TRPD_MYCTU
[Raw transfer]




PRP_B_7(3QSA)
TRPD_MYCTU
[Raw transfer]




GOL_C_12(2ELC)
TRPD_THET8
[Raw transfer]




6F0_A_7(4OWO)
TRPD_MYCTU
[Raw transfer]




GOL_D_13(2ELC)
TRPD_THET8
[Raw transfer]




PRP_A_5(4OWM)
TRPD_MYCTU
[Raw transfer]




FA0_A_6(4N5V)
TRPD_MYCTU
[Raw transfer]




PRP_B_12(4OWO)
TRPD_MYCTU
[Raw transfer]




PRP_A_7(4N93)
TRPD_MYCTU
[Raw transfer]




PRP_A_3(3R6C)
TRPD_MYCTU
[Raw transfer]




FA0_B_14(4N5V)
TRPD_MYCTU
[Raw transfer]




GOL_A_9(2ELC)
TRPD_THET8
[Raw transfer]




636_A_6(4GIU)
TRPD_MYCTU
[Raw transfer]




GOL_A_9(2ELC)
TRPD_THET8
[Raw transfer]




PRP_A_5(4OWU)
TRPD_MYCTU
[Raw transfer]




GOL_C_11(2ELC)
TRPD_THET8
[Raw transfer]




PRP_A_5(3QQS)
TRPD_MYCTU
[Raw transfer]




PRP_C_13(3QQS)
TRPD_MYCTU
[Raw transfer]




PRP_C_14(3UU1)
TRPD_MYCTU
[Raw transfer]




PRP_B_10(4N5V)
TRPD_MYCTU
[Raw transfer]




PRP_B_9(4N93)
TRPD_MYCTU
[Raw transfer]




PRP_B_7(3R88)
TRPD_MYCTU
[Raw transfer]




PRP_B_11(4GKM)
TRPD_MYCTU
[Raw transfer]




5RG_B_14(4OWN)
TRPD_MYCTU
[Raw transfer]




PRP_A_3(4GKM)
TRPD_MYCTU
[Raw transfer]




PRP_A_3(4GIU)
TRPD_MYCTU
[Raw transfer]




PRP_A_5(4OWQ)
TRPD_MYCTU
[Raw transfer]




PRP_A_5(4OWO)
TRPD_MYCTU
[Raw transfer]




PRP_B_12(4OWU)
TRPD_MYCTU
[Raw transfer]




PRP_B_10(4OWM)
TRPD_MYCTU
[Raw transfer]




17C_A_8(3QQS)
TRPD_MYCTU
[Raw transfer]




17C_B_12(3QQS)
TRPD_MYCTU
[Raw transfer]




683_B_14(4GKM)
TRPD_MYCTU
[Raw transfer]




14B_C_18(3UU1)
TRPD_MYCTU
[Raw transfer]




PRP_B_12(4OWN)
TRPD_MYCTU
[Raw transfer]




683_A_6(4GKM)
TRPD_MYCTU
[Raw transfer]




17N_A_6(3R6C)
TRPD_MYCTU
[Raw transfer]




PRP_B_6(3GBR)
TRPD_SULSO
[Raw transfer]




POP_A_3(4OWS)
TRPD_MYCTU
[Raw transfer]




BE2_B_4(4OWV)
TRPD_MYCTU
[Raw transfer]




FA0_B_4(4N8Q)
TRPD_MYCTU
[Raw transfer]




FA0_A_3(4N8Q)
TRPD_MYCTU
[Raw transfer]




82 HHSearch 96.4041% -91 - C13 -1VQU - TRPD2_NOSS1 -
84 HHSearch 96.2941% -98 * C13 *2ELC 2.4 TRPD_THET8
12 PsiBlast_PDB 94.9636% -92 - C13 -4N8Q 2.5 TRPD_MYCTU
67 PsiBlast_CBE 94.2636% -91 - C13 -3QR9 - TRPD_MYCTU -
47 PsiBlast_CBE 94.1636% -92 - C13 -4OWM 5.2 TRPD_MYCTU
60 PsiBlast_CBE 94.1136% -91 - C13 -3R6C 6.4 TRPD_MYCTU
69 PsiBlast_CBE 94.0036% -93 - C13 -3QQS 4.1 TRPD_MYCTU
16 PsiBlast_PDB 93.8836% -89 - C13 -4GIU 6.9 TRPD_MYCTU
56 PsiBlast_CBE 93.7536% -92 - C13 -3TWP - TRPD_MYCTU -
19 PsiBlast_PDB 93.7536% -92 - C13 -4OWQ 6.1 TRPD_MYCTU
35 PsiBlast_CBE 93.7036% -92 - C13 -2BPQ - TRPD_MYCTU -
59 PsiBlast_CBE 93.6536% -90 - C13 -3R6C 6.5 TRPD_MYCTU
42 PsiBlast_CBE 93.6536% -90 - C13 -4OWV 2.9 TRPD_MYCTU
52 PsiBlast_CBE 93.6136% -94 - C13 -3UU1 5.5 TRPD_MYCTU
61 PsiBlast_CBE 93.6036% -91 - C13 -3QSA 6.4 TRPD_MYCTU
72 Fugue 93.5738% -98 - C13 -1KHD - ? -
70 PsiBlast_CBE 93.5736% -91 - C13 -3QQS 5.8 TRPD_MYCTU
18 PsiBlast_PDB 93.5736% -92 - C13 -4OWO 6.5 TRPD_MYCTU
49 PsiBlast_CBE 93.5436% -92 - C13 -4M0R 5.7 TRPD_MYCTO
37 PsiBlast_CBE 93.5036% -96 - C13 -4N8Q 3.5 TRPD_MYCTU
62 PsiBlast_CBE 93.3936% -89 - C13 -3QSA 6.7 TRPD_MYCTU
46 PsiBlast_CBE 93.2136% -92 - C13 -4OWN 4.3 TRPD_MYCTU
20 PsiBlast_PDB 93.1536% -98 - C13 -4OWS 4.3 TRPD_MYCTU
45 PsiBlast_CBE 93.1236% -91 - C13 -4OWO 7.0 TRPD_MYCTU
50 PsiBlast_CBE 93.0736% -90 - C13 -4GKM 6.3 TRPD_MYCTU
58 PsiBlast_CBE 93.0436% -91 - C13 -3R88 6.3 TRPD_MYCTU
44 PsiBlast_CBE 93.0336% -91 - C13 -4OWU 6.6 TRPD_MYCTU
39 PsiBlast_CBE 92.9541% -97 - C13 -2ELC 3.5 TRPD_THET8
17 PsiBlast_PDB 92.9236% -90 - C13 -4OWM 6.1 TRPD_MYCTU
38 PsiBlast_CBE 92.9136% -92 - C13 -4N5V 6.6 TRPD_MYCTU
36 PsiBlast_CBE 92.8636% -91 - C13 -4N93 6.7 TRPD_MYCTU
13 PsiBlast_PDB 92.8136% -89 - C13 -4N93 6.4 TRPD_MYCTU
43 PsiBlast_CBE 92.7836% -89 - C13 -4OWU 6.8 TRPD_MYCTU
11 PsiBlast_PDB 92.7836% -91 - C13 -4N5V 6.9 TRPD_MYCTU
71 PsiBlast_CBE 92.7136% -90 - C13 -3QQS 5.8 TRPD_MYCTU
57 PsiBlast_CBE 92.6936% -92 - C13 -3R88 7.0 TRPD_MYCTU
15 PsiBlast_PDB 92.2141% -95 - C13 -2ELC 2.4 TRPD_THET8
51 PsiBlast_CBE 92.0836% -90 - C13 -4GKM 6.4 TRPD_MYCTU
34 PsiBlast_CBE 91.1835% -91 - C13 -3GBR 3.4 TRPD_SULSO
40 PsiBlast_CBE 90.8641% -96 - C13 -2ELC 3.3 TRPD_THET8