@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo1651: (2016-03-27 )
MEAMNEQDEMLVMSGKEHREVLKRMLSYTKYHIPSLIWTGVLVLLVTLADVFAPILIKIFLDDYLTPMNLEMQALLILGAGYLGLTIGKSVVWYFQLLFFQKIALEIVQQMRIDIFTKLHSLGMRYFDKTPAGSIVSRVTNDTEAVKDMFINVLSTAIQSLFMLVGIYAAMFALNVQLALYSLLLFPLIVFIIFVYRKYSSQFYRARREKLSQLNAKIAESISGMSIVQQFNQERRLVKEFEKINKDYYDVGMKNIKFNALLLGPAIDLIYALAVVIILSFFGAESLIGPVAIGTIYAFISYFDRFLEAIYNVMERLAMYQEAITAASRVFRIMDETEEVPAQLNDPEAKITRAKIEFKDVSFAYEGGRDVLKNISFTAEPGQTVALVGHTGSGKSSIINLMMRFYEFERGDILIDGKSIKSHEITELRKKTGLVLQDSFMFYGDINTNIRLYDKSITDEQIVDAAKFVQADGFIQTLSDEYNHKVIERGASFSSGQRQLISFARTVVTNPQILVLDEATANIDTETESLIQTGLKRMREGRTTIAIAHRLSTIKDADLILVLSKGRIIERGTHDSLIAEEGVYHSMYQLQNSGMDLDEAL

Atome Classification :

(56 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATP_F_6(2FGK)
HLYBP_ECOLX
[Raw transfer]




ATP_C_11(1XEF)
HLYBP_ECOLX
[Raw transfer]




ATP_H_8(2FGK)

[Raw transfer]




ATP_H_8(2FGJ)

[Raw transfer]




ATP_E_5(2FGK)
HLYBP_ECOLX
[Raw transfer]




ATP_A_9(1XEF)
HLYBP_ECOLX
[Raw transfer]




ATP_A_3(2IXE)
TAP1_RAT
[Raw transfer]




ATP_C_9(1MV5)
LMRA_LACLA
[Raw transfer]




ATP_E_5(2FGJ)
HLYBP_ECOLX
[Raw transfer]




ATP_A_2(4K8O)

[Raw transfer]




ATP_D_12(1XEF)

[Raw transfer]




ATP_G_7(2FGK)
HLYBP_ECOLX
[Raw transfer]




128_A_2(2PMK)

[Raw transfer]




ATP_B_10(1XEF)
HLYBP_ECOLX
[Raw transfer]




ATP_A_3(2IXE)
TAP1_RAT
[Raw transfer]




ATP_D_6(2IXE)

[Raw transfer]




ATP_A_2(2IXG)

[Raw transfer]




ATP_D_5(3VX4)
?
[Raw transfer]




ADP_B_2(2FF7)

[Raw transfer]




ADP_B_2(2FFB)

[Raw transfer]




ATP_D_15(2IXF)

[Raw transfer]




ADP_B_2(2FFA)

[Raw transfer]




ATP_C_12(2IXF)
TAP1_RAT
[Raw transfer]




ADP_A_2(5DGX)
?
[Raw transfer]




ATP_A_3(3VX4)
?
[Raw transfer]




ATP_A_3(3VX4)
?
[Raw transfer]




ATP_B_8(2IXF)
TAP1_RAT
[Raw transfer]




ATP_F_6(2FGJ)
HLYBP_ECOLX
[Raw transfer]




ATP_A_5(2IXF)
TAP1_RAT
[Raw transfer]




ADP_B_8(1MV5)
LMRA_LACLA
[Raw transfer]




ADP_A_3(1JJ7)

[Raw transfer]




ATP_G_7(2FGJ)
HLYBP_ECOLX
[Raw transfer]




12D_A_2(3B5J)

[Raw transfer]




ATP_A_7(1MV5)
LMRA_LACLA
[Raw transfer]




ATP_A_7(1MV5)
LMRA_LACLA
[Raw transfer]




ADP_D_10(1MV5)

[Raw transfer]




1 PsiBlast_PDB 90.6536%-126 - C2 -4Q4J - Y288_THEMA -
2 PsiBlast_PDB 90.2736%-128 - C2 -3QF4 - Y288_THEMA -
3 PsiBlast_PDB 89.9736%-126 - C2 -4Q4A - Y288_THEMA -
4 PsiBlast_PDB 89.9536%-123 - C2 -4Q4H - Y288_THEMA -
84 HHSearch 80.5230%-107 - C2 -3B60 - MSBA_SALTY -
6 PsiBlast_PDB 80.1732%-116 - C2 -2ONJ - Y1866_STAAM -
12 PsiBlast_PDB 79.6531%-108 - C2 -3B60 - MSBA_SALTY -
5 PsiBlast_PDB 79.4432%-115 - C2 -2HYD - Y1866_STAAM -
105 Fugue 79.2829%-107 - C2 -3B60 - MSBA_SALTY -
25 PsiBlast_CBE 79.0631%-108 - C2 -3B60 - MSBA_SALTY -
23 PsiBlast_CBE 78.8931%-108 - C2 -3B60 - MSBA_SALTY -
24 PsiBlast_CBE 78.8831%-108 - C2 -3B60 - MSBA_SALTY -
22 PsiBlast_CBE 78.2232%-115 - C2 -2HYD - Y1866_STAAM -
21 PsiBlast_CBE 78.1332%-116 - C2 -2ONJ - Y1866_STAAM -
86 HHSearch 78.0126%-110 - C2 -3WMG - ? -
13 PsiBlast_PDB 76.7030%-115 - C2 -4RY2 - ? -
106 Fugue 75.4727%-110 - C1 -4F4C - PGP1_CAEEL -
19 PsiBlast_PDB 74.9828%-104 - C2 -4AYX - ABCBA_HUMAN -
20 PsiBlast_PDB 74.0428%-102 - C2 -3ZDQ - ABCBA_HUMAN -
85 HHSearch 73.6126%-105 - C2 -3ZDQ - ABCBA_HUMAN -
54 PsiBlast_CBE 54.2142% -97 - C2 -2FFA 6.1
55 PsiBlast_CBE 54.1742% -98 - C2 -1XEF 6.1
56 PsiBlast_CBE 53.9942%-103 - C2 -1XEF 6.7 HLYBP_ECOLX
49 PsiBlast_CBE 53.9842% -96 - C2 -2FFB 6.0
43 PsiBlast_CBE 53.9742% -97 - C2 -2PMK 6.5
57 PsiBlast_CBE 53.6742% -99 - C2 -1XEF 6.8 HLYBP_ECOLX
58 PsiBlast_CBE 53.4642%-101 - C2 -1XEF 6.2 HLYBP_ECOLX
94 HHSearch 53.0242% -91 - C2 -2FF7 6.4
51 PsiBlast_CBE 52.9442% -97 - C2 -2FGJ 6.3 HLYBP_ECOLX
47 PsiBlast_CBE 52.9242% -99 - C2 -2FGK 6.3 HLYBP_ECOLX
53 PsiBlast_CBE 52.9142% -95 - C2 -2FGJ 6.2 HLYBP_ECOLX
50 PsiBlast_CBE 52.7542% -98 - C2 -2FGJ 6.3
45 PsiBlast_CBE 52.4542%-100 - C2 -2FGK 6.6
48 PsiBlast_CBE 52.3542% -95 - C2 -2FGK 6.3 HLYBP_ECOLX
44 PsiBlast_CBE 51.9642% -98 - C2 -3B5J 6.2
46 PsiBlast_CBE 51.9142% -95 - C2 -2FGK 5.7 HLYBP_ECOLX
52 PsiBlast_CBE 51.5642% -95 - C2 -2FGJ 5.8 HLYBP_ECOLX
75 PsiBlast_CBE 49.9534% -89 - C2 -2IXE 6.4
67 PsiBlast_CBE 49.5434% -86 - C2 -2IXF 6.8
76 PsiBlast_CBE 49.2034% -87 - C2 -2IXE 6.6 TAP1_RAT
66 PsiBlast_CBE 49.1835% -80 - C2 -1JJ7 6.0
68 PsiBlast_CBE 48.9034% -86 - C2 -2IXF 6.9 TAP1_RAT
93 HHSearch 48.5733% -78 - C2 -2IXE 7.4 TAP1_RAT
69 PsiBlast_CBE 48.3934% -87 - C2 -2IXF 7.0 TAP1_RAT
78 PsiBlast_CBE 48.3833% -87 - C2 -4K8O 6.1
77 PsiBlast_CBE 48.2233% -85 - C2 -2IXG 6.2
70 PsiBlast_CBE 48.2134% -85 - C2 -2IXF 6.7 TAP1_RAT
65 PsiBlast_CBE 47.3635% -87 - C2 -3VX4 6.7 ?
91 HHSearch 47.1640% -82 - C2 -1MV5 4.8 LMRA_LACLA
63 PsiBlast_CBE 47.0738% -94 - C2 -5DGX 6.8 ?
89 HHSearch 46.8832% -80 - C2 -3VX4 6.7 ?
64 PsiBlast_CBE 46.4535% -85 - C2 -3VX4 6.2 ?
61 PsiBlast_CBE 45.5641% -74 - C2 -1MV5 6.8 LMRA_LACLA
60 PsiBlast_CBE 45.3041% -78 - C2 -1MV5 6.2 LMRA_LACLA
62 PsiBlast_CBE 42.9841% -72 - C2 -1MV5 4.8 LMRA_LACLA
59 PsiBlast_CBE 42.3441% -73 - C2 -1MV5 5.0