@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo1652: (2016-03-27 )
LKIYKALGWFFKENWKSYAFGVTILFTIALLQLVPPQIIGYTVDAVTNDSLTKDKLIKWMIILVVAAILAYGGRYVWRMLIFGSDNKLQRTLRLRLFEHFTKMSPFFFQRYRTGDLMAHATNDITAIQQVAGIGVLTLSDSVLTGGTVIATMAITIDWRLTLIALLPMPFMVLGSSILGKKLHDRFHGAQAAFSMLNDKTQESISGIKVTRTFGQEKEDIQDFAKQTKEVVQKNISVAKVDAMFDPMISIIVGVSFVLSLGFGAKFVVDGELTIGQVIAFSNYLFLLIWPMLAFGFLYNIIQRGNASYDRVQHLLAEKEDVLDQEGALDTVPVGDLQVTMDKFTYPDESEPVLADIHFNLKAGETLGIVGRTGSGKTSLLKLLMREYDTYEGKIAFANVKIQDYTVRALREAIGYVPQDQFLFSTTVRDNIRFGKPDAPQEEVTKIAKLVSVDEDILGFENGYDTIVGERGVSLSGGQKQRLAIARALIMNPELLILDDALSAVDAKTEEQILANLKENRSDKTTIISAHRLSSVEHANLIIVIDKGRIVERGTHMELMALDGWYAEMFREQQLEEALEEGGVADGSDE

Atome Classification :

(66 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATP_F_6(2FGK)
HLYBP_ECOLX
[Raw transfer]




ATP_A_9(1XEF)
HLYBP_ECOLX
[Raw transfer]




ATP_D_12(1XEF)

[Raw transfer]




ATP_G_7(2FGK)
HLYBP_ECOLX
[Raw transfer]




ATP_E_5(2FGK)
HLYBP_ECOLX
[Raw transfer]




ATP_H_8(2FGK)

[Raw transfer]




12D_A_2(3B5J)

[Raw transfer]




ADP_B_2(2FFA)

[Raw transfer]




ATP_C_11(1XEF)
HLYBP_ECOLX
[Raw transfer]




ATP_D_12(1R0X)

[Raw transfer]




ATP_E_5(2FGJ)
HLYBP_ECOLX
[Raw transfer]




ADP_B_2(2FF7)

[Raw transfer]




ATP_B_10(1XEF)
HLYBP_ECOLX
[Raw transfer]




ADP_B_2(2FF7)

[Raw transfer]




ATP_A_3(3VX4)
?
[Raw transfer]




ATP_G_7(2FGJ)
HLYBP_ECOLX
[Raw transfer]




ANP_D_12(1Q3H)

[Raw transfer]




ATP_H_8(2FGJ)

[Raw transfer]




ATP_B_10(1R0Z)
CFTR_MOUSE
[Raw transfer]




ATP_B_10(1R0X)
CFTR_MOUSE
[Raw transfer]




128_A_2(2PMK)

[Raw transfer]




ATP_A_9(1R0X)
CFTR_MOUSE
[Raw transfer]




ATP_F_6(2FGJ)
HLYBP_ECOLX
[Raw transfer]




ADP_B_2(2FFB)

[Raw transfer]




ANP_A_9(1Q3H)
CFTR_MOUSE
[Raw transfer]




ANP_B_10(1Q3H)
CFTR_MOUSE
[Raw transfer]




ATP_D_5(3VX4)
?
[Raw transfer]




ATP_C_11(1R0X)
CFTR_MOUSE
[Raw transfer]




ATP_A_7(1MV5)
LMRA_LACLA
[Raw transfer]




ADP_A_3(1JJ7)

[Raw transfer]




ATP_A_3(2CBZ)

[Raw transfer]




ATP_C_9(1MV5)
LMRA_LACLA
[Raw transfer]




ATP_D_12(1R0Z)

[Raw transfer]




ANP_C_11(1Q3H)
CFTR_MOUSE
[Raw transfer]




ATP_A_7(1MV5)
LMRA_LACLA
[Raw transfer]




ADP_H_8(1R0Y)

[Raw transfer]




ATP_A_9(1R0Z)
CFTR_MOUSE
[Raw transfer]




ATP_A_5(1R10)
CFTR_MOUSE
[Raw transfer]




ADP_F_6(1R0Y)
CFTR_MOUSE
[Raw transfer]




ATP_A_3(3VX4)
?
[Raw transfer]




ATP_B_6(1R10)

[Raw transfer]




ADP_E_5(1R0Y)
CFTR_MOUSE
[Raw transfer]




ATP_C_11(1R0Z)
CFTR_MOUSE
[Raw transfer]




ADP_G_7(1R0Y)
CFTR_MOUSE
[Raw transfer]




ATP_C_9(1MV5)
LMRA_LACLA
[Raw transfer]




ATP_A_7(1MV5)

[Raw transfer]




ADP_D_10(1MV5)
LMRA_LACLA
[Raw transfer]




ADP_B_8(1MV5)
LMRA_LACLA
[Raw transfer]




22 PsiBlast_CBE 88.0132% -97 - C1 -2HYD - Y1866_STAAM -
21 PsiBlast_CBE 87.9932% -97 - C1 -2ONJ - Y1866_STAAM -
2 PsiBlast_PDB 87.7232% -97 - C1 -2ONJ - Y1866_STAAM -
1 PsiBlast_PDB 87.4432% -96 - C1 -2HYD - Y1866_STAAM -
5 PsiBlast_PDB 86.5633% -97 - C1 -4Q4A - Y288_THEMA -
4 PsiBlast_PDB 85.8633% -97 - C1 -3QF4 - Y288_THEMA -
6 PsiBlast_PDB 85.2033% -93 - C1 -4Q4H - Y288_THEMA -
7 PsiBlast_PDB 83.5232% -94 - C1 -4Q4J - Y288_THEMA -
103 HHSearch 79.5627% -88 - C1 -3ZDQ - ABCBA_HUMAN -
14 PsiBlast_PDB 79.2928% -92 - C1 -4AYX - ABCBA_HUMAN -
15 PsiBlast_PDB 78.9328% -91 - C1 -3ZDQ - ABCBA_HUMAN -
101 HHSearch 78.6228% -83 - C1 -3B60 - MSBA_SALTY -
16 PsiBlast_PDB 78.2628% -93 - C1 -4AYW - ABCBA_HUMAN -
122 Fugue 77.9927% -83 - C1 -3B60 - MSBA_SALTY -
13 PsiBlast_PDB 77.6528% -89 - C1 -4AYT - ABCBA_HUMAN -
3 PsiBlast_PDB 76.9632% -95 - C1 -4A82 - Y1866_STAAM -
104 HHSearch 76.5926% -91 - C1 -3WMG - ? -
10 PsiBlast_PDB 75.9331% -78 - C1 -3B60 - MSBA_SALTY -
23 PsiBlast_CBE 75.7831% -78 - C1 -3B60 - MSBA_SALTY -
125 Fugue 75.5327% -90 - C1 -4F4C - PGP1_CAEEL -
109 HHSearch 55.1041% -86 - C1 -2FF7 6.8
53 PsiBlast_CBE 54.8541% -87 - C1 -1XEF 6.6
44 PsiBlast_CBE 54.8141% -89 - C1 -2FGK 6.8 HLYBP_ECOLX
54 PsiBlast_CBE 54.7541% -94 - C1 -1XEF 6.7 HLYBP_ECOLX
42 PsiBlast_CBE 54.2741% -89 - C1 -2FGK 7.0
48 PsiBlast_CBE 54.1841% -89 - C1 -2FGJ 6.2
43 PsiBlast_CBE 54.1741% -86 - C1 -2FGK 6.0 HLYBP_ECOLX
52 PsiBlast_CBE 54.0941% -85 - C1 -2FFA 6.8
55 PsiBlast_CBE 54.0541% -89 - C1 -1XEF 6.8 HLYBP_ECOLX
107 HHSearch 53.8134% -92 * C1 *3VX4 6.6 ?
49 PsiBlast_CBE 53.7041% -85 - C1 -2FGJ 6.4 HLYBP_ECOLX
58 PsiBlast_CBE 53.6937% -87 - C1 -3VX4 5.3 ?
50 PsiBlast_CBE 53.6441% -89 - C1 -2FGJ 6.8 HLYBP_ECOLX
56 PsiBlast_CBE 53.5941% -89 - C1 -1XEF 6.2 HLYBP_ECOLX
40 PsiBlast_CBE 53.5741% -88 - C1 -2FF7 6.8
51 PsiBlast_CBE 53.4941% -87 - C1 -2FGJ 6.6 HLYBP_ECOLX
46 PsiBlast_CBE 53.1241% -86 - C1 -2FFB 6.7
59 PsiBlast_CBE 52.8837% -90 - C1 -3VX4 5.3 ?
45 PsiBlast_CBE 52.8141% -86 - C1 -2FGK 6.8 HLYBP_ECOLX
39 PsiBlast_CBE 52.5541% -86 - C1 -2PMK 7.3
47 PsiBlast_CBE 49.4141% -82 - C1 -3B5J 7.2
75 PsiBlast_CBE 48.8538% -78 - C1 -1JJ7 6.3
110 HHSearch 47.7834% -75 - C1 -1MV5 6.6 LMRA_LACLA
61 PsiBlast_CBE 45.8535% -79 - C1 -1MV5 5.9 LMRA_LACLA
60 PsiBlast_CBE 45.3635% -73 - C1 -1MV5 3.3
63 PsiBlast_CBE 45.2835% -76 - C1 -1MV5 6.7 LMRA_LACLA
77 PsiBlast_CBE 43.3536% -69 - C1 -2CBZ 6.8
62 PsiBlast_CBE 39.9735% -66 - C1 -1MV5 4.3 LMRA_LACLA
97 PsiBlast_CBE 39.8131% -73 - C1 -1Q3H 3.7
85 PsiBlast_CBE 38.8231% -74 - C1 -1R0Y 3.6
79 PsiBlast_CBE 38.6531% -68 - C1 -1R0Z 3.9
83 PsiBlast_CBE 38.2231% -69 - C1 -1R10 3.7
100 PsiBlast_CBE 38.1331% -69 - C1 -1Q3H 4.5 CFTR_MOUSE
92 PsiBlast_CBE 37.9131% -71 - C1 -1R0X 4.3 CFTR_MOUSE
80 PsiBlast_CBE 37.7031% -65 - C1 -1R0Z 3.9 CFTR_MOUSE
89 PsiBlast_CBE 37.5231% -73 - C1 -1R0X 4.1
90 PsiBlast_CBE 37.3831% -69 - C1 -1R0X 4.4 CFTR_MOUSE
82 PsiBlast_CBE 37.1831% -65 - C1 -1R0Z 3.7 CFTR_MOUSE
98 PsiBlast_CBE 36.8531% -72 - C1 -1Q3H 4.3 CFTR_MOUSE
84 PsiBlast_CBE 36.6731% -70 - C1 -1R10 3.1 CFTR_MOUSE
99 PsiBlast_CBE 36.2431% -66 - C1 -1Q3H 4.3 CFTR_MOUSE
87 PsiBlast_CBE 36.2331% -69 - C1 -1R0Y 3.2 CFTR_MOUSE
81 PsiBlast_CBE 36.2031% -65 - C1 -1R0Z 3.7 CFTR_MOUSE
86 PsiBlast_CBE 36.0931% -65 - C1 -1R0Y 4.0 CFTR_MOUSE
91 PsiBlast_CBE 35.9131% -69 - C1 -1R0X 4.0 CFTR_MOUSE
88 PsiBlast_CBE 34.9231% -69 - C1 -1R0Y 3.3 CFTR_MOUSE