@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo1675: (2016-03-27 )
MTNHEQVLTDYLAAFIEELVQAGVKEAIISPGSRSTPLALMMAEHPILKIYVDVDERSAGFFALGLAKASKRPVVLLCTSGTAAANYFPAVAEANLSQIPLIVLTADRPHELRNVGAPQAMDQLHLYGSHVKDFTDMALPENSEEMLRYAKWHGSRAVDIAMKTPRGPVHLNFPLREPLVPILEPSPFTATGKKHHHVHIYYTHEVLDDSSIQKMVTECTGKKGVFVVGPIDKKELEQPMVDLAKKLGWPILADPLSGLRSYGALDEVVIDQYDAFLKEAEIMDKLTPEVVIRFGSMPVSKPLKNWLEQLSDIRFYVVDPGAAWKDPIKAVTDMIHCDERFLLDIMQQNMPDDAKDAAWLSRWTSYNKVAREIVLAEMANTTILEEGKIVAELRRLLPEKAGLFIGNSMPIRDVDTYFSQIDKKIKMLANRGANGIDGVVSSALGASVVFQPMFLLIGDLSFYHDMNGLLMAKKYKMNLTIVIVNNDGGGIFSFLPQANEPKYFESLFGTSTELDFRFAAAFYDADYHETQSVDELEEAIDKASYHKGLDIIEVKTNRHENKANHQALWAKIADALKALN

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

TPP_A_3(2JLC)
MEND_ECOLI
[Raw transfer]




TPP_A_3(2JLC)
MEND_ECOLI
[Raw transfer]




TPP_B_5(2JLC)
MEND_ECOLI
[Raw transfer]




AKG_A_3(3HWW)
MEND_ECOLI
[Raw transfer]




40 HHSearch 98.2397%-114 - C7 -3LQ1 - MEND_LISMF -
1 PsiBlast_PDB 97.8298%-112 - C7 -3LQ1 - MEND_LISMF -
39 HHSearch 82.5948% -94 - C7 -2X7J - MEND_BACSU -
23 PsiBlast_CBE 82.1749% -95 - C7 -2X7J - MEND_BACSU -
2 PsiBlast_PDB 80.5049% -94 - C7 -2X7J - MEND_BACSU -
22 PsiBlast_CBE 79.9649% -93 - C7 -2X7J - MEND_BACSU -
21 PsiBlast_CBE 79.8949% -93 - C7 -2X7J - MEND_BACSU -
4 PsiBlast_PDB 66.0130% -76 - C7 -3FLM - MEND_ECOLI -
24 PsiBlast_CBE 65.7931% -71 - C7 -2JLC 7.1 MEND_ECOLI
7 PsiBlast_PDB 65.7031% -73 - C7 -2JLA - MEND_ECOLI -
5 PsiBlast_PDB 65.4030% -75 - C7 -3HWW 3.6 MEND_ECOLI
3 PsiBlast_PDB 65.0731% -75 - C7 -2JLC 7.0 MEND_ECOLI
6 PsiBlast_PDB 64.9230% -75 - C7 -3HWX - MEND_ECOLI -
63 Fugue 63.3630% -75 - C7 -2JLC 7.0 MEND_ECOLI
45 HHSearch 59.2629% -69 - C7 -3HWW - MEND_ECOLI -
48 HHSearch 58.6115% -84 - C7 -3EYA - POXB_ECOLI -
16 PsiBlast_PDB 58.0922% -69 - C7 -4QEL - MDLC_PSEPU -
19 PsiBlast_PDB 57.9522% -71 - C7 -4JU9 - MDLC_PSEPU -
15 PsiBlast_PDB 57.6622% -71 - C7 -4GM4 - MDLC_PSEPU -
11 PsiBlast_PDB 57.3921% -70 - C7 -4MQ5 - MDLC_PSEPU -