@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo1685: (2016-03-27 )
MDHSMSKKLHDEALLHIVGGVNSPSRSNKGVGGGIPVTMERASGAYFYDVDGNKYIDYLAAFGPIITGHAHPHITEAITKAAQNGVLYGTPTKHEITFAKMLKEAIPSLEKVRFTNSGTEAVMTTIRVARAYTGRDKIIKFAGCYHGHFDLVLVEAGSGPSTLGIPDSAGVTKSTAEEVITVPFNDLDSFKEALAIWGDQVAAVLVEPIVGNFGMVAPEDGFLEAVNELAHVNGSLVIYDEVITAFRFMYGGAQNYLGVIPDLTAMGKIIGGGLPIGAYGGRIDIMEKVAPLGPAYQAGTHAGNPASILSGIACLEVLQEEGLYERFEKYGSMLKDGIEKAAAKHNIAVTVNQIVGALTVYFTEDPVTNYAEAGATNGELFGRFFKGMLEEGINLAPSKYEAWFITSAHSEADILETIQAVDTVFGKMVQDN

Atome Classification :

(52 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

PMP_A_3(2HOZ)
GSA_SYNP6
[Raw transfer]




EA5_A_3(2HP1)
GSA_SYNP6
[Raw transfer]




PMP_C_3(3GSB)
GSA_SYNP6
[Raw transfer]




PMP_A_3(2GSA)
GSA_SYNP6
[Raw transfer]




PMP_A_3(3FQ8)
GSA_SYNP6
[Raw transfer]




PMP_E_5(3GSB)
GSA_SYNP6
[Raw transfer]




KE4_A_3(2HP2)
GSA_SYNP6
[Raw transfer]




PXG_A_3(3FQ7)
GSA_SYNP6
[Raw transfer]




PMP_A_3(2GSA)
GSA_SYNP6
[Raw transfer]




PMP_B_4(2HOZ)
GSA_SYNP6
[Raw transfer]




PXG_B_4(3FQ7)
GSA_SYNP6
[Raw transfer]




PMP_B_5(3FQA)
GSA_SYNP6
[Raw transfer]




IK2_C_18(2YKV)
?
[Raw transfer]




PMP_A_2(3BS8)
GSA_BACSU
[Raw transfer]




IK2_A_3(4AOA)
BFAT_VARPD
[Raw transfer]




PLK_A_4(4AO4)
?
[Raw transfer]




IK2_A_4(2YKV)
?
[Raw transfer]




PMP_A_4(2E7U)
GSA_THET8
[Raw transfer]




PLK_B_7(4AO4)
?
[Raw transfer]




PLR_A_3(3USF)
GSA_SYNE7
[Raw transfer]




PMP_A_4(2E7U)
GSA_THET8
[Raw transfer]




PLK_C_12(4AO4)
?
[Raw transfer]




PMP_B_4(3FQ8)
GSA_SYNP6
[Raw transfer]




IK2_B_11(2YKV)
?
[Raw transfer]




PMP_B_6(2ZSM)
GSA_AERPE
[Raw transfer]




PMP_A_2(2EPJ)
GSA_AERPE
[Raw transfer]




PLP_A_5(2YKY)
?
[Raw transfer]




PMP_A_2(2EPJ)
GSA_AERPE
[Raw transfer]




PMP_A_2(2ZSL)
GSA_AERPE
[Raw transfer]




PMP_C_8(2ZSM)
GSA_AERPE
[Raw transfer]




IK2_B_5(4AOA)
BFAT_VARPD
[Raw transfer]




PLP_B_11(2YKY)
?
[Raw transfer]




PLR_B_5(3USF)
GSA_SYNE7
[Raw transfer]




PLP_C_21(2YKY)
?
[Raw transfer]




PMP_A_4(2ZSM)
GSA_AERPE
[Raw transfer]




PLP_A_5(2YKY)
?
[Raw transfer]




PLR_A_3(2CFB)
GSA_THEEB
[Raw transfer]




PLP_B_4(2GSA)
GSA_SYNP6
[Raw transfer]




PLP_B_4(2HP1)
GSA_SYNP6
[Raw transfer]




PLP_B_9(2YKX)
?
[Raw transfer]




PLP_C_17(2YKU)
?
[Raw transfer]




PLP_A_4(2YKU)
?
[Raw transfer]




PLP_B_4(4GSA)
GSA_SYNP6
[Raw transfer]




PLP_B_4(4AO9)
BFAT_VARPD
[Raw transfer]




PLP_B_10(2YKU)
?
[Raw transfer]




PLP_A_3(4AO9)
BFAT_VARPD
[Raw transfer]




PLP_A_4(2YKX)
?
[Raw transfer]




PLP_A_3(4GSA)
GSA_SYNP6
[Raw transfer]




PLP_C_11(2YKX)
?
[Raw transfer]




PLP_B_4(2HP2)
GSA_SYNP6
[Raw transfer]




HOZ_B_5(2HP2)
GSA_SYNP6
[Raw transfer]




HOZ_A_4(3USF)
GSA_SYNE7
[Raw transfer]




GAB_D_4(3GSB)
GSA_SYNP6
[Raw transfer]




EDO_C_22(2YKV)
?
[Raw transfer]




EDO_C_12(2YKX)
?
[Raw transfer]




4 PsiBlast_PDB 91.3050%-101 - C1 -2HOZ 4.0 GSA_SYNP6
12 PsiBlast_PDB 89.1047% -94 - C1 -3BS8 3.5 GSA_BACSU
11 PsiBlast_PDB 88.6850% -96 - C1 -3GSB 4.4 GSA_SYNP6
7 PsiBlast_PDB 88.3850% -96 - C1 -3FQ7 5.7 GSA_SYNP6
25 PsiBlast_CBE 88.3150%-101 - C1 -2HOZ 3.6 GSA_SYNP6
108 HHSearch 87.6647% -92 - C1 -2E7U 3.8 GSA_THET8
10 PsiBlast_PDB 87.5850% -94 - C1 -4GSA 3.2 GSA_SYNP6
128 Fugue 87.4548% -90 - C1 -2GSA 4.3 GSA_SYNP6
6 PsiBlast_PDB 87.0750% -98 - C1 -2HP2 4.7 GSA_SYNP6
9 PsiBlast_PDB 86.9350% -93 - C1 -2GSA 4.3 GSA_SYNP6
31 PsiBlast_CBE 86.9250% -97 - C1 -2GSA 3.5 GSA_SYNP6
29 PsiBlast_CBE 86.8950% -96 - C1 -4GSA 3.5 GSA_SYNP6
1 PsiBlast_PDB 86.6150% -95 - C1 -3FQ8 - GSA_SYNP6 -
28 PsiBlast_CBE 86.5650% -95 * C1 *3FQ7 4.4 GSA_SYNP6
2 PsiBlast_PDB 86.4950% -96 - C1 -3FQA - GSA_SYNP6 -
106 HHSearch 86.3849% -91 - C1 -3FQ8 4.8 GSA_SYNP6
21 PsiBlast_CBE 86.2750% -96 - C1 -3FQ8 4.1 GSA_SYNP6
5 PsiBlast_PDB 86.2650% -96 - C1 -2HP1 4.1 GSA_SYNP6
30 PsiBlast_CBE 86.0150% -95 - C1 -3GSB 3.9 GSA_SYNP6
8 PsiBlast_PDB 85.9750% -96 - C1 -3USF 3.6 GSA_SYNE7
14 PsiBlast_PDB 85.8346% -91 - C1 -2E7U 3.8 GSA_THET8
23 PsiBlast_CBE 85.8250% -94 - C1 -2HP2 3.0 GSA_SYNP6
22 PsiBlast_CBE 85.4950% -96 - C1 -3FQA 4.3 GSA_SYNP6
13 PsiBlast_PDB 85.2949%-110 - C1 -2CFB 2.9 GSA_THEEB
27 PsiBlast_CBE 82.9350%-103 - C1 -3USF 4.0 GSA_SYNE7
24 PsiBlast_CBE 82.2550%-100 - C1 -2HP1 3.8 GSA_SYNP6
32 PsiBlast_CBE 73.6837% -90 - C1 -2ZSM 4.1 GSA_AERPE
33 PsiBlast_CBE 73.2937% -92 - C1 -2ZSM 3.9 GSA_AERPE
17 PsiBlast_PDB 72.8437% -90 - C1 -2ZSM 4.0 GSA_AERPE
114 HHSearch 72.1135% -87 - C1 -2EPJ 4.4 GSA_AERPE
16 PsiBlast_PDB 71.5837% -89 - C1 -2ZSL 4.4 GSA_AERPE
15 PsiBlast_PDB 71.4437% -89 - C1 -2EPJ 4.4 GSA_AERPE
48 PsiBlast_CBE 69.6531% -99 - C1 -4AO9 3.1 BFAT_VARPD
49 PsiBlast_CBE 69.4131% -98 - C1 -4AO9 3.2 BFAT_VARPD
46 PsiBlast_CBE 67.9831% -97 - C1 -4AOA 4.5 BFAT_VARPD
109 HHSearch 67.4431% -90 - C1 -2YKY 4.0 ?
47 PsiBlast_CBE 67.1631% -97 - C1 -4AOA 4.7 BFAT_VARPD
42 PsiBlast_CBE 61.1132% -91 - C1 -2YKV 4.1 ?
34 PsiBlast_CBE 60.9832% -91 - C1 -4AO4 4.8 ?
19 PsiBlast_PDB 60.8132% -90 - C1 -2YKV 4.3 ?
43 PsiBlast_CBE 60.3432% -90 - C1 -2YKV 4.1 ?
35 PsiBlast_CBE 60.0632% -90 - C1 -4AO4 5.1 ?
38 PsiBlast_CBE 60.0232% -91 - C1 -2YKY 4.2 ?
37 PsiBlast_CBE 59.9532% -91 - C1 -2YKY 4.4 ?
36 PsiBlast_CBE 59.9432% -90 - C1 -4AO4 5.4 ?
18 PsiBlast_PDB 59.8332% -90 - C1 -2YKU 4.3 ?
40 PsiBlast_CBE 59.8232% -89 - C1 -2YKX 3.2 ?
45 PsiBlast_CBE 59.8132% -90 - C1 -2YKU 3.1 ?
39 PsiBlast_CBE 59.7532% -90 - C1 -2YKY 4.1 ?
41 PsiBlast_CBE 59.4432% -90 - C1 -2YKX 3.4 ?
20 PsiBlast_PDB 59.4232% -89 - C1 -2YKX 3.2 ?
44 PsiBlast_CBE 59.2132% -88 - C1 -2YKU 3.0 ?