@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo1769: (2016-03-28 )
MPNMEPTTKEIKEQKIYQEMGLTDSEYELVCSILGREPNYTETGLFSVMWSEHCSYKNSKPVLRKFPTEGKQVLQGPGEGAGIVDIGDGLGVAFKVESHNHPSYVEPYQGAATGVGGIIRDVFSMGARPIAMLNSLRFGELDTPHAKYLVSEVVAGIAGYGNSIGIPTVGGEIQFDPCYTKNPLVNAMCVGLIEAKDIQKGQAKGIGNPVMYVGAKTGRDGIHGATFASVEFSEEGEQQRSAVQVGDPFMEKLLLEACLDVIRDHSDILVGIQDMGAAGLVSSSSEMASKAGAGLELIMDDVPQRELHMTPYEMLLSESQERMLLCVKKGHVEEIQALFERYGLEAVVIGQVTDDKMYKIIHHGEVVANVPVDALAEDAPVYHKPSKEPTRYQAFQEEEAFVPAMDDVVGVWKELLAQPTIASKRHIYEQYDYQVRTDTAVVPGSDAAIVRVRGTEKAIAMTTDCNSRYLYLDPEVGGAIAVAEAARNIVCSGGKPLAITDGLNFGNPEKPEIFWEIEKAADGISAACLELDTPVISGNVSLYNETDGTGIYPTPVIGMVGLVEDLAHITTQDFKNSGDVIFLIGETKAEYSGSELQKLQQGKISGRAPELDLVTEKKYQQLLLTAIQEGLVASSHDLAEGGFGVALAEATFKAGLGAEVEVPFALNQLFSESQSRFLVSVKPENEAAFAQLMELEKVYRLGVVTEDDTIRVKHKEDQVTAKTTELRSIWEGAIPCLLK

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ACP_A_6(2HS4)
PURL_THEMA
[Raw transfer]



ACP_A_5(2HRY)
PURL_THEMA
[Raw transfer]



ATP_A_5(2HS0)
PURL_THEMA
[Raw transfer]



ADP_A_2(3VIU)
PURL_THET8
[Raw transfer]



ADP_A_5(2HRU)
PURL_THEMA
[Raw transfer]



FGR_A_3(2HS3)
PURL_THEMA
[Raw transfer]



TPP_B_16(3C9U)
THIL_AQUAE
[Raw transfer]
26 HHSearch 97.9748% -79 - C4 -3VIU 5.0 PURL_THET8
1 PsiBlast_PDB 94.7349% -76 - C4 -3VIU - PURL_THET8 -
9 PsiBlast_PDB 78.9024% -43 - C4 -3UGJ - PUR4_SALTY -
10 PsiBlast_PDB 78.7124% -42 - C4 -1T3T - PUR4_SALTY -
13 PsiBlast_PDB 78.3124% -41 - C4 -4MGH - PUR4_SALTY -
14 PsiBlast_PDB 77.9524% -42 - C4 -4LGY - PUR4_SALTY -
12 PsiBlast_PDB 77.3224% -41 - C4 -3UMM - PUR4_SALTY -
7 PsiBlast_PDB 77.2824% -43 - C4 -4L78 - PUR4_SALTY -
3 PsiBlast_PDB 77.1438% -71 - C4 -2HS3 5.4 PURL_THEMA
11 PsiBlast_PDB 76.8424% -42 - C4 -3UJN - PUR4_SALTY -
8 PsiBlast_PDB 76.8424% -41 - C4 -4R7G - PUR4_SALTY -
4 PsiBlast_PDB 76.3838% -70 - C4 -2HS4 4.6 PURL_THEMA
5 PsiBlast_PDB 75.6838% -74 - C4 -2HRU 4.7 PURL_THEMA
6 PsiBlast_PDB 75.4538% -78 - C4 -2HRY 5.3 PURL_THEMA
2 PsiBlast_PDB 74.5838% -78 - C4 -2HS0 4.8 PURL_THEMA
31 HHSearch 57.9122% -68 - C4 -3VIU - PURL_THET8 -
28 HHSearch 51.7321% -45 - C4 -3U0O - SELD_ECOLI -
30 HHSearch 50.4717% -68 - C4 -2ZOD - SELD_AQUAE -
52 Fugue 49.5716% -51 - C4 -2YYE - SELD_AQUAE -
41 HHSearch 48.5218% -57 - C4 -3M84 - ? -