@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo1775: (2016-03-28 )
MPAVIGVIMGSTSDWDTMKKACDVLDELEIAYEKKVVSAHRTPDLMFQYAEQARERGLKIIIAGAGGAAHLPGMVAAKTTLPVIGVPIKSKALNGMDSLLSIVQMPGGVPVATVAIGESGAVNAGLLAAQILSITDDAITNRLQKRRATLEETVLESSDYLG

Atome Classification :

(34 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NIA_A_2(2NSH)
PURE_ECOLI
[Raw transfer]




C2R_I_9(2NSL)
PURE_ECOLI
[Raw transfer]




C2R_I_9(2NSJ)
PURE_ECOLI
[Raw transfer]




AIR_I_9(2FWJ)
?
[Raw transfer]




AIR_A_3(2FWI)
?
[Raw transfer]




CIT_B_3(2FW6)
?
[Raw transfer]




CIT_M_13(2FWP)
?
[Raw transfer]




CIT_A_3(1U11)
?
[Raw transfer]




CIT_A_3(1U11)
?
[Raw transfer]




FMT_A_7(3LP6)
PURE_MYCTU
[Raw transfer]




GOL_B_9(3LP6)
PURE_MYCTU
[Raw transfer]




FMT_D_23(3LP6)
PURE_MYCTU
[Raw transfer]




FMT_C_21(3LP6)
PURE_MYCTU
[Raw transfer]




FMT_A_7(3LP6)
PURE_MYCTU
[Raw transfer]




CIT_B_4(1U11)
?
[Raw transfer]




FMT_D_26(3LP6)
PURE_MYCTU
[Raw transfer]




ACY_I_9(2FW1)
?
[Raw transfer]




ACY_M_13(2FW1)
?
[Raw transfer]




3 PsiBlast_PDB 98.2475%-133 - C8 -4AY3 - ? -
21 PsiBlast_CBE 97.3975%-131 - C8 -4AY4 - ? -
1 PsiBlast_PDB 97.3775%-133 - C8 -1XMP - ? -
24 PsiBlast_CBE 97.1175%-131 - C8 -4AY3 - ? -
25 PsiBlast_CBE 96.8775%-132 - C8 -4AY3 - ? -
26 PsiBlast_CBE 96.7275%-133 - C8 -4AY3 - ? -
23 PsiBlast_CBE 96.5475%-134 - C8 -4AY4 - ? -
22 PsiBlast_CBE 96.0175%-130 - C8 -4AY4 - ? -
2 PsiBlast_PDB 95.9675%-133 - C8 -4B4K - ? -
65 HHSearch 95.9167%-128 - C8 -3OOW - ? -
4 PsiBlast_PDB 95.6675%-129 - C8 -4AY4 - ? -
5 PsiBlast_PDB 94.1366%-129 - C8 -3OOW - ? -
6 PsiBlast_PDB 93.5366%-128 - C8 -3OPQ - ? -
72 HHSearch 91.1560%-130 - C8 -3ORS - ? -
9 PsiBlast_PDB 90.7963%-128 - C8 -2FWJ 4.7 ?
29 PsiBlast_CBE 90.7762%-128 - C8 -2FWP 4.0 ?
18 PsiBlast_PDB 90.6765%-130 - C8 -4GRD - ? -
15 PsiBlast_PDB 90.3862%-129 - C8 -2FWB - ? -
16 PsiBlast_PDB 89.9962%-129 - C8 -2FWI 3.8 ?
14 PsiBlast_PDB 89.7762%-129 - C8 -2FW9 - ? -
68 HHSearch 89.7061%-128 * C8 *1U11 3.8 ?
10 PsiBlast_PDB 89.7063%-129 - C8 -1U11 3.8 ?
27 PsiBlast_CBE 89.4563%-128 - C8 -2FW1 3.3 ?
30 PsiBlast_CBE 89.4262%-127 - C8 -2FW6 3.6 ?
8 PsiBlast_PDB 89.0263%-128 - C8 -2FW1 3.6 ?
28 PsiBlast_CBE 88.9863%-128 - C8 -1U11 3.7 ?
41 PsiBlast_CBE 88.4055%-126 - C8 -2NSL 6.1 PURE_ECOLI
43 PsiBlast_CBE 88.0255%-127 - C8 -2NSH 5.7 PURE_ECOLI
39 PsiBlast_CBE 87.6159%-137 - C8 -3LP6 3.6 PURE_MYCTU
38 PsiBlast_CBE 87.5859%-133 - C8 -3LP6 3.4 PURE_MYCTU
42 PsiBlast_CBE 87.0855%-126 - C8 -2NSJ 5.9 PURE_ECOLI
40 PsiBlast_CBE 86.5159%-132 - C8 -3LP6 3.6 PURE_MYCTU
63 HHSearch 86.4556%-128 - C8 -3LP6 3.4 PURE_MYCTU
19 PsiBlast_PDB 85.1559%-132 - C8 -3LP6 3.4 PURE_MYCTU