@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo1792: (2016-03-28 )
MKIDILSIFPDMFSGVTGNSIIKKAIENERVAVEVTDFREYAEGKHHIVDDYPYGGGAGMLLKAQPIFDAVQAVKEKQPETKPRVILMDPAGKRFNQKMAEEFAEEEHLVFICGHYEGYDERIREHLVTDEVSIGDYILTGGEIGAMIVMDSVIRLLPGVLGNKDSAVTDSFSTGLLEHPHYTRPADFRGMKVPDILLSGNHAWIEEWRDKESLKRTYERRPDLLKNYPLTDKQKTWLKEWSDSK

Atome Classification :

(25 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

SAH_C_3(1UAL)
TRMD_HAEIN
[Raw transfer]




21W_B_8(4MCB)
TRMD_HAEIN
[Raw transfer]




21X_A_3(4MCC)
TRMD_HAEIN
[Raw transfer]




21X_B_4(4MCC)
TRMD_HAEIN
[Raw transfer]




SAH_C_3(1UAL)
TRMD_HAEIN
[Raw transfer]




SFG_B_5(4YVI)
?
[Raw transfer]




SAH_A_2(1P9P)
TRMD_ECOLI
[Raw transfer]




SFG_A_2(4YVH)
?
[Raw transfer]




SFG_B_5(4YVJ)
?
[Raw transfer]




SAH_E_5(1UAM)
TRMD_HAEIN
[Raw transfer]




SFG_B_5(4YVK)
?
[Raw transfer]




ADN_A_2(3AXZ)
TRMD_HAEIN
[Raw transfer]




SAH_A_2(4IG6)
TRMD_ANAPZ
[Raw transfer]




SAM_C_3(1UAK)
TRMD_HAEIN
[Raw transfer]




SAM_A_2(4YVG)
?
[Raw transfer]




SAH_A_3(4H3Z)
TRMD_BURP8
[Raw transfer]




SFG_A_4(4YVI)
?
[Raw transfer]




SAH_B_6(4H3Z)
TRMD_BURP8
[Raw transfer]




22L_A_2(4MCD)
TRMD_HAEIN
[Raw transfer]




EDO_B_6(3QUV)
?
[Raw transfer]




EDO_A_3(3QUV)
?
[Raw transfer]




EDO_A_3(3QUV)
?
[Raw transfer]




22 PsiBlast_CBE 98.1045%-120 - C5 -4MCB 6.6 TRMD_HAEIN
25 PsiBlast_CBE 97.7045%-118 - C5 -4YVI 6.7 ?
23 PsiBlast_CBE 97.4545%-120 - C5 -4YVK 5.7 ?
54 Fugue 97.3844%-121 * C5 *1UAL 6.2 TRMD_HAEIN
24 PsiBlast_CBE 96.8345%-117 - C5 -4YVJ 5.4 ?
11 PsiBlast_PDB 96.3345%-125 - C5 -1UAL 6.2 TRMD_HAEIN
10 PsiBlast_PDB 96.2445%-127 - C5 -1UAK 7.4 TRMD_HAEIN
13 PsiBlast_PDB 96.1543%-130 - C5 -4H3Y - TRMD_BURP8 -
27 PsiBlast_CBE 96.0643%-127 - C5 -4H3Y - TRMD_BURP8 -
4 PsiBlast_PDB 96.0345%-124 - C5 -4MCD 5.5 TRMD_HAEIN
12 PsiBlast_PDB 95.9245%-117 - C5 -1UAM 6.5 TRMD_HAEIN
1 PsiBlast_PDB 95.7046%-128 - C5 -1P9P 6.3 TRMD_ECOLI
7 PsiBlast_PDB 95.1145%-122 - C5 -4YVH 6.8 ?
6 PsiBlast_PDB 95.0245%-123 - C5 -4YVG 7.3 ?
5 PsiBlast_PDB 94.9545%-128 - C5 -3AXZ 5.6 TRMD_HAEIN
9 PsiBlast_PDB 94.8545%-127 - C5 -1UAJ - TRMD_HAEIN -
21 PsiBlast_CBE 94.7745%-130 - C5 -4MCC 6.2 TRMD_HAEIN
26 PsiBlast_CBE 94.3343%-127 - C5 -4H3Z 6.2 TRMD_BURP8
8 PsiBlast_PDB 94.2245%-126 - C5 -4YVI 6.9 ?
14 PsiBlast_PDB 93.8443%-131 - C5 -4H3Z 7.1 TRMD_BURP8
28 PsiBlast_CBE 93.0346%-130 - C5 -3QUV 3.0 ?
18 PsiBlast_PDB 90.6046%-135 - C5 -3QUV 3.2 ?
17 PsiBlast_PDB 90.4144%-120 - C5 -4IG6 7.0 TRMD_ANAPZ
32 HHSearch 89.3446%-126 - C5 -3QUV 3.2 ?
3 PsiBlast_PDB 88.8645%-133 - C5 -4MCC 6.2 TRMD_HAEIN