@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo1804: (2016-03-28 )
MLLKRLEMNGFKSFADKVAIDFVPGMTAVVGPNGSGKSNITEAIRWVLGEQSAKSLRGGRMGDVIFAGSDTRKPINFAEVSLILENEDHFLPLDYSEVAVTRRIYRNGDSEFLINKENCRLKDIVDLFMDSGLGRESFSIISQGKIDEILNSKPEERRSIFEEAAGVLKYKHRKKQAENKLFETEENLNRVQDILYELEGQLEPLEMQASIAKDYLFQQEELEKYEVTLLASEISSLTEKLAEVRKEFGENQTVLIKLREELHAEEAVISREKQALNETDIALDKLQERLLVETEKLEQLEGERNLQLERKKHSSENEQVYAETLAVITEKITALEEQKEVLSSSKLEKETALEIAIKSKKVLEATLAKYDDLSEEAIENRKSDYIDLRHTQTTINNDLGYIERQIGQITSRIDKLDLENSHHVDDRKDMLAQIETTKTHLTKIQSELTEQMEIYREVQQTLAKQEAVFGTQERALYKHYETVQQMKSRKETLEELADDYAGFFQGVREVLKAKKEIPGILGALVELVEIPAKYQQAMETALGASAQNVVVEDDRVAREAISFLKKTKSGRATFLPLSTIQPRELPAATKNALSNQPAFIALASEVISFDEKVSPVILNALGTTILAKDLKGANTLARLVNFRYRIVTLEGDVVNAGGSMTGGATKGGKSSILTRKHELGQLAEKIAELNESTREMESAVQLAKDSMAKKREELEETRVIGENLRLQEKELLGKLDRETENLERFNKQLQLYDIEKADGSEELNKLLERKETLLQEQVEIAKQIEVTDEEIKAMTSSSKALESKRAADLESLSSLKAQIAAKREQLQSATEAVERVTTTLHENYEQKEAAEQKLASLKTNLTSVHTSEETARKSIEELRKDKTETSEKLTQTRQTRAELQEKLELLEAELTQKNNQISFYMEQKNNAEISIGRLEVDIANRIDRLQEAYLLTPEQAEEKILSEVNTEQARSKVRLLKRSIDELGIVNIGAIEEFERIQERFDFLTGQQADLLAAKETLFKVMDEMDEEMKIRFSESFEAIKTEFAIVFPELFGGGSAELVLLDPENLLTTGIDIVVQPPGKKLQNLSLRSGGERALTAIALLFAIIRVRPVPFCILDEVEAALDEANVTRFSRYLKQFESGTQFIVITHRKGTMEEADVLYGVTMQESGVSKLVSVRLEETAELIK

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

AP5_A_5(3KTA)
SMC_PYRFU
[Raw transfer]



AP5_A_5(3KTA)
SMC_PYRFU
[Raw transfer]



ATP_A_4(1XEX)
?
[Raw transfer]



ATP_A_4(1XEX)
?
[Raw transfer]
99 HHSearch 77.9170% -33 - C1 -3ZGX - SMC_BACSU -
84 Fugue 71.5718% -4 * C1 *4UX3 - SMC3_YEAST -
81 Fugue 70.4328% -15 - C1 -1E69 - ? -
4 PsiBlast_PDB 69.0827% -50 - C2 -1GXL - ? -
97 HHSearch 67.0744% -30 - C1 -3KTA - ? -
21 PsiBlast_CBE 65.5042% -34 - C1 -1XEX 3.0 ?
91 HHSearch 65.4439% -14 - C1 -3KTA 9.0 SMC_PYRFU
93 HHSearch 65.3176% 31 - C1 -3ZGX - SMC_BACSU -
12 PsiBlast_PDB 65.2330% -44 - C2 -3L51 - -
6 PsiBlast_PDB 65.2129% -59 - C2 -1GXJ - ? -
82 Fugue 65.1429% -54 - C2 -1GXJ - ? -
10 PsiBlast_PDB 64.8732% -36 - C2 -4U4P - ? -
3 PsiBlast_PDB 64.7039% -11 - C1 -3KTA 9.0 SMC_PYRFU
8 PsiBlast_PDB 64.3625% -16 - C1 -4UX3 - SMC3_YEAST -
7 PsiBlast_PDB 63.9129% -61 - C2 -1GXK - ? -
2 PsiBlast_PDB 63.2039% -16 - C1 -1XEX 8.4 ?
107 HHSearch 62.3730% -45 - C2 -3L51 - -
11 PsiBlast_PDB 61.3525% -34 - C2 -4RSI - -
96 HHSearch 61.2628% -53 - C2 -1GXJ - ? -
87 Fugue 61.2322% 35 - C1 -1E69 - ? -