@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo1807: (2016-03-29 )
MTLQGKVAVVTGGSRGIGRDIAINLAKEGANIFFNYNGSPEAAEETAKLVAEHGVEVEAMKANVAIAEDVDAFFKQAIERFGRVDILVNNAGITRDNLLMRMKEDEWDDVININLKGTFLCTKAVSRTMMKQRAGKIINMASVVGLIGNAGQANYVASKAGVIGLTKTTARELAPRGINVNAVAPGFITTDMTDKLDEKTKEAMLAQIPLGAYGTTEDIANAVLFLASDASKYITGQTLSVDGGMVM

Atome Classification :

(42 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NDP_A_3(3SJ7)
?
[Raw transfer]




NAP_E_5(1EDO)
FABG1_BRANA
[Raw transfer]




NAP_B_19(3RSH)
FABG_VIBCH
[Raw transfer]




NAP_B_5(4JRO)
?
[Raw transfer]




NAP_C_6(4JRO)
?
[Raw transfer]




NAP_A_8(3RSH)
FABG_VIBCH
[Raw transfer]




NAP_B_6(4DMM)
?
[Raw transfer]




NAD_A_5(2CFC)
HCDR_XANP2
[Raw transfer]




NDP_B_6(3SJ7)
?
[Raw transfer]




NDP_B_16(4I08)
FABG_VIBCH
[Raw transfer]




NAP_D_7(4JRO)
?
[Raw transfer]




NAP_C_7(4DMM)
?
[Raw transfer]




NAP_A_5(3ICC)
?
[Raw transfer]




NAP_A_13(1Q7B)
FABG_ECOLI
[Raw transfer]




NAP_B_14(1Q7B)
FABG_ECOLI
[Raw transfer]




NAP_C_15(1Q7B)
FABG_ECOLI
[Raw transfer]




NAP_D_16(1Q7B)
FABG_ECOLI
[Raw transfer]




NAP_D_8(4DMM)
?
[Raw transfer]




NDP_B_6(4WK6)
?
[Raw transfer]




NAP_A_5(3TZC)
?
[Raw transfer]




NDP_C_7(4WK6)
?
[Raw transfer]




NDP_D_8(4WK6)
?
[Raw transfer]




NAP_E_5(1Q7C)
FABG_ECOLI
[Raw transfer]




NDP_A_5(4WK6)
?
[Raw transfer]




NAP_G_7(1Q7C)
FABG_ECOLI
[Raw transfer]




GOL_A_3(3GED)
?
[Raw transfer]




EDO_A_11(3RRO)
FABG_VIBCH
[Raw transfer]




EDO_B_21(3RRO)
FABG_VIBCH
[Raw transfer]




PEG_A_6(3OSU)
FABG_STAAM
[Raw transfer]




PEG_B_17(3OSU)
FABG_STAAM
[Raw transfer]




PEG_A_3(3OSU)
FABG_STAAM
[Raw transfer]




PGE_B_24(3RRO)
FABG_VIBCH
[Raw transfer]




PGE_A_8(3RRO)
FABG_VIBCH
[Raw transfer]




22 PsiBlast_CBE 97.35100% -90 - C1 -4JRO 12.4 ?
1 PsiBlast_PDB 95.02100% -92 - C1 -4JRO - ? -
21 PsiBlast_CBE 94.21100% -87 - C1 -4JRO 10.8 ?
23 PsiBlast_CBE 90.19100% -90 - C1 -4JRO 11.9 ?
24 PsiBlast_CBE 79.7862% -82 - C1 -3SJ7 12.1 ?
75 PsiBlast_CBE 79.3553% -98 - C1 -4BO2 - FABG_PSEAE -
4 PsiBlast_PDB 78.8960% -80 - C1 -3OSU 2.4 FABG_STAAM
2 PsiBlast_PDB 78.2966% -83 - C1 -2UVD - ? -
99 PsiBlast_CBE 77.6353% -94 - C1 -4BNW - FABG_PSEAE -
63 PsiBlast_CBE 77.2853%-103 - C1 -4BO6 - FABG_PSEAE -
89 PsiBlast_CBE 77.2053% -98 - C1 -4BNY - FABG_PSEAE -
85 PsiBlast_CBE 76.8553% -94 - C1 -4BNZ - FABG_PSEAE -
96 PsiBlast_CBE 76.6953% -98 - C1 -4BNX - FABG_PSEAE -
81 PsiBlast_CBE 76.5253% -96 - C1 -4BO0 - FABG_PSEAE -
92 PsiBlast_CBE 76.5053% -95 - C1 -4BNY - FABG_PSEAE -
54 PsiBlast_CBE 76.4453% -95 - C1 -4BO8 - FABG_PSEAE -
67 PsiBlast_CBE 76.4053% -96 - C1 -4BO4 - FABG_PSEAE -
14 PsiBlast_PDB 76.3555% -77 - C1 -3RSH 11.1 FABG_VIBCH
3 PsiBlast_PDB 76.3062% -79 - C1 -3SJ7 11.3 ?
93 PsiBlast_CBE 76.2953% -97 - C1 -4BNX - FABG_PSEAE -
33 PsiBlast_CBE 76.1655% -77 - C1 -4I08 9.8 FABG_VIBCH
9 PsiBlast_PDB 75.9254% -84 - C1 -1EDO 12.6 FABG1_BRANA
34 PsiBlast_CBE 74.7855% -78 - C1 -3RSH 10.3 FABG_VIBCH
26 PsiBlast_CBE 73.8756% -83 - C1 -4DMM 12.1 ?
25 PsiBlast_CBE 73.6556% -84 - C1 -4DMM 11.1 ?
35 PsiBlast_CBE 73.3155% -77 - C1 -3RRO 3.0 FABG_VIBCH
15 PsiBlast_PDB 73.2755% -76 - C1 -3RRO 2.9 FABG_VIBCH
27 PsiBlast_CBE 72.9256% -84 - C1 -4DMM 12.5 ?
29 PsiBlast_CBE 72.3055% -81 - C1 -4WK6 4.9 ?
30 PsiBlast_CBE 72.2055% -86 - C1 -4WK6 5.4 ?
12 PsiBlast_PDB 71.3755% -83 - C1 -4WK6 4.6 ?
28 PsiBlast_CBE 70.3755% -84 - C1 -4WK6 6.0 ?
49 PsiBlast_CBE 69.7852% -75 - C1 -1Q7B 8.6 FABG_ECOLI
46 PsiBlast_CBE 69.1752% -75 * C1 *1Q7B 7.8 FABG_ECOLI
47 PsiBlast_CBE 69.1352% -76 - C1 -1Q7B 8.8 FABG_ECOLI
48 PsiBlast_CBE 68.4352% -74 - C1 -1Q7B 9.4 FABG_ECOLI
16 PsiBlast_PDB 67.8754% -88 - C1 -3TZC 4.6 ?
51 PsiBlast_CBE 67.5551% -76 - C1 -1Q7C 5.5 FABG_ECOLI
50 PsiBlast_CBE 66.3151% -75 - C1 -1Q7C 4.2 FABG_ECOLI
104 HHSearch 65.4836% -71 - C1 -2CFC 7.8 HCDR_XANP2
112 HHSearch 64.8735% -72 - C1 -3ICC 5.8 ?
123 HHSearch 56.4031% -78 - C1 -3GED 2.3 ?