@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo1820: (2016-03-29 )
MMIGKRLSDRYKILHAIGGGGMANVYLAHDIILDRDVAVKILRIDLADESNLIRRFQREAQSATSLVHPNIVSVYDVGEENDLHYIVMEHVDGMDLKQYIHENHPISYEKAVDIMLQIVSAVAIAHQHHIIHRDLKPQNILIDHDGVVKITDFGIAMALSETSITQTNSLLGSVHYLSPEQARGGMATQKSDIYSLGIVLYELLTGKVPFDGESAVSIAIKHLQADIPSAREQNPEIPQSLENIIIKATAKDPFLRYQNAEEMEKDLQTCLNKDRLNEPKYVFPTDDGDTKAIPIIATKDTMQNLDKTIVPEGKVAAAEVVPEEKKDKKKKKMSKKKKIALIVSSVIIIFIIGILLLWLLGKSPDEVAVPDVSGKTEDQAVALLQKEGFVIGKTAEKNSDEVDEGKVINTDPEAGEMKEKGTKINLFVSIGSKKITMDDYTGRSYTDTKALLEEQGFKNISSEEAYSSEIEKGLIISQTPTQGTEVVAKSTDVKFVVSKGAEPITLKDLRGYTKTAVEDYASPLGLKVSSKEENSSTVEKGQVISQSPSAGTAMNSGDTIEIVISAGPKEKQVKEVTKTFNIPYTPSDEENPQPQKIQIYIQDKDHSMTSAYREMSITQNTSVEITFQIEEGSSAGYKIISDDKVIDEGTVPYPN

Atome Classification :

(25 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ACP_A_2(1O6Y)
PKNB_MYCTU
[Raw transfer]




ANP_A_2(4BL1)
MELK_HUMAN
[Raw transfer]




AGS_A_2(3ORO)
?
[Raw transfer]




ADP_A_2(3F61)
PKNB_MYCTU
[Raw transfer]




AGS_A_2(3ORM)
?
[Raw transfer]




AGS_A_2(3ORK)
?
[Raw transfer]




AGS_A_2(3ORP)
?
[Raw transfer]




AGS_A_2(3ORT)
?
[Raw transfer]




82B_A_2(4BKY)
MELK_HUMAN
[Raw transfer]




GOL_A_9(3HZT)
?
[Raw transfer]




OT5_A_2(4CQG)
MELK_MOUSE
[Raw transfer]




MIX_E_5(2FUM)
PKNB_MYCTU
[Raw transfer]




1WS_A_2(4BKZ)
MELK_HUMAN
[Raw transfer]




STU_A_3(3CBL)

[Raw transfer]




MIX_G_7(2FUM)
PKNB_MYCTU
[Raw transfer]




24 PsiBlast_CBE 84.2750% -92 - C2 -4EQM - ? -
1 PsiBlast_PDB 83.8950% -92 - C2 -4EQM - ? -
25 PsiBlast_CBE 83.8350% -93 - C2 -4EQM - ? -
23 PsiBlast_CBE 83.1850% -92 - C2 -4EQM - ? -
21 PsiBlast_CBE 82.8250% -91 - C2 -4EQM - ? -
22 PsiBlast_CBE 82.8150% -92 - C2 -4EQM - ? -
3 PsiBlast_PDB 80.7246% -87 - C2 -3ORK 4.6 ?
9 PsiBlast_PDB 78.6745% -86 - C2 -3F61 5.1 PKNB_MYCTU
5 PsiBlast_PDB 78.0246% -83 - C2 -3ORP 6.9 ?
8 PsiBlast_PDB 77.6947% -85 - C2 -2FUM 4.2 PKNB_MYCTU
4 PsiBlast_PDB 77.6346% -80 - C2 -3ORO 7.8 ?
6 PsiBlast_PDB 77.3046% -84 - C2 -3ORT 7.2 ?
7 PsiBlast_PDB 76.9947% -90 - C2 -1O6Y 5.5 PKNB_MYCTU
2 PsiBlast_PDB 76.6746% -85 - C2 -3ORM 6.7 ?
26 PsiBlast_CBE 76.4947% -91 - C2 -2FUM 4.6 PKNB_MYCTU
11 PsiBlast_PDB 72.2540% -87 - C2 -4OW8 - PKNA_MYCTU -
76 Fugue 68.5027% -56 - C2 -3H4J - SNF1_SCHPO -
94 HHSearch 65.9031% -77 - C2 -3FE3 - MARK3_HUMAN -
86 HHSearch 64.4931% -84 - C2 -3H4J - SNF1_SCHPO -
16 PsiBlast_PDB 63.9234% -87 - C2 -3IEC - MARK2_HUMAN -
61 PsiBlast_CBE 57.4632% -89 - C2 -4BKY 7.9 MELK_HUMAN
59 PsiBlast_CBE 57.1932% -84 - C2 -4BL1 6.4 MELK_HUMAN
70 PsiBlast_CBE 57.1132% -86 - C2 -4CQG 8.6 MELK_MOUSE
60 PsiBlast_CBE 54.7532% -83 - C2 -4BKZ 5.7 MELK_HUMAN
39 PsiBlast_CBE 52.6232% -88 - C2 -3HZT 3.1 ?