@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo1825: (2016-03-29 )
MQGKNILLAVSGGIAVYKAVALTSKLTQAGANVKVMMTAHAQEFVPPLSFQVLSKNDVYTDTFDEKKSSVVAHIDLADWADLVIVAPATANVIGKMANGIADDMVTTTILATEAPVWVAPAMNVHMIQHPAVIRNINRLYADGVRFIEPEEGYLACGYVGRGRLEEPEKIVLRIAEFFQEDKNLLQGKNVLVTAGATREKLDPVRYFTNHSTGKMGFSIAESAARHGANVTLITTSKALPVPHGVEAIYVESAEEMHQAVNERKVSQDIFVMTAAVADYTPAQVSDQKIKKQPGDFTIAMKRTKDILLEIGQHKTSEQVVIGFAAETENVEANARKKLTSKNADMIVANNISEAGAGFSGDTNIVTFYRKDGSSEALPILDKKEVAEHIIKEAANFLRK

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

PMT_E_5(1U7Z)
COABC_ECOLI
[Raw transfer]



PMT_E_5(1U7Z)
COABC_ECOLI
[Raw transfer]



PMT_E_5(1U7Z)
COABC_ECOLI
[Raw transfer]



PMT_G_7(1U7Z)
COABC_ECOLI
[Raw transfer]



CTP_B_8(1U7W)
COABC_ECOLI
[Raw transfer]



CTP_A_7(1U7W)
COABC_ECOLI
[Raw transfer]



PMT_F_6(1U7Z)
COABC_ECOLI
[Raw transfer]



C5P_K_11(1U80)
COABC_ECOLI
[Raw transfer]



CTP_A_3(4QJI)
?
[Raw transfer]



C5P_I_9(1U80)
COABC_ECOLI
[Raw transfer]



C5P_J_10(1U80)
COABC_ECOLI
[Raw transfer]



CTP_B_5(4QJI)
?
[Raw transfer]
53 Fugue 92.9143% -72 - C4 -1U7Z 10.6 COABC_ECOLI
41 HHSearch 92.8545% -74 - C4 -1U7Z 10.6 COABC_ECOLI
4 PsiBlast_PDB 88.9946% -71 - C4 -1U80 4.6 COABC_ECOLI
21 PsiBlast_CBE 88.0746% -72 - C4 -1U80 3.7 COABC_ECOLI
3 PsiBlast_PDB 87.6446% -67 - C4 -1U7Z 10.6 COABC_ECOLI
23 PsiBlast_CBE 87.5046% -67 - C4 -1U7Z 10.3 COABC_ECOLI
24 PsiBlast_CBE 87.0046% -64 - C4 -1U7Z 9.2 COABC_ECOLI
25 PsiBlast_CBE 86.5446% -75 - C4 -1U7W 4.3 COABC_ECOLI
22 PsiBlast_CBE 86.5146% -71 - C4 -1U80 3.9 COABC_ECOLI
2 PsiBlast_PDB 86.1046% -76 - C4 -1U7W 4.5 COABC_ECOLI
26 PsiBlast_CBE 85.7137% -70 - C4 -4QJI 5.2 ?
5 PsiBlast_PDB 84.2937% -82 - C4 -4QJI 5.3 ?
1 PsiBlast_PDB 80.5846% -70 - C4 -1U7U - COABC_ECOLI -
31 HHSearch 79.3629% -75 * C4 *2GK4 - ? -
33 HHSearch 75.8534%-102 - C4 -1MVL - HAL3A_ARATH -
6 PsiBlast_PDB 75.3535%-104 - C4 -1E20 - HAL3A_ARATH -
9 PsiBlast_PDB 74.6834%-103 - C4 -1MVN - HAL3A_ARATH -
54 Fugue 74.0731%-101 - C4 -1E20 - HAL3A_ARATH -
11 PsiBlast_PDB 73.6528% -59 - C4 -2GK4 - ? -
55 Fugue 73.3433% -93 - C4 -1E20 - HAL3A_ARATH -