@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo1827: (2016-03-29 )
MTERGLLIVLSGPSGVGKGTVREAVFKDPETSFDYSISMTTRLPREGEQDGVDYYFRSREVFEQAIKDGKMLEYAEYVGNYYGTPLEYVEEKLAAGVDIFLEIEVQGAMQVRKAMPEGIFIFLTPPDLSELKNRIIGRGTESMEVVEERMETAKKEIEMMASYDYAVVNDVVANAVQKIKGIVETEHLKTERVIHRYKKMLEGLQ

Atome Classification :

(36 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

G5P_G_7(2F3R)
KGUA_ECOLI
[Raw transfer]




G5P_J_10(2F3R)
KGUA_ECOLI
[Raw transfer]




0O2_B_8(4QRH)
?
[Raw transfer]




0O2_D_18(4QRH)
?
[Raw transfer]




0O2_C_12(4QRH)
?
[Raw transfer]




GDP_S_19(2AN9)
KGUA_ECOLI
[Raw transfer]




5GP_D_15(2J41)
KGUA_STAAC
[Raw transfer]




5GP_C_11(2J41)
KGUA_STAAC
[Raw transfer]




5GP_B_8(2J41)
KGUA_STAAC
[Raw transfer]




GDP_M_13(2AN9)
KGUA_ECOLI
[Raw transfer]




5GP_M_13(2ANB)
KGUA_ECOLI
[Raw transfer]




5GP_A_2(2QOR)
?
[Raw transfer]




5GP_D_4(1GKY)
KGUA_YEAST
[Raw transfer]




5GP_A_4(3TR0)
KGUA_COXBU
[Raw transfer]




5GP_A_4(3TR0)
KGUA_COXBU
[Raw transfer]




5GP_D_4(1EX7)
KGUA_YEAST
[Raw transfer]




5GP_D_4(1EX7)
KGUA_YEAST
[Raw transfer]




GDP_B_2(1ZNZ)
KGUA_MYCTU
[Raw transfer]




GDP_B_2(1ZNY)
KGUA_MYCTU
[Raw transfer]




5GP_B_2(1ZNX)
KGUA_MYCTU
[Raw transfer]




FMT_A_3(1S4Q)
KGUA_MYCTU
[Raw transfer]




FMT_B_2(1Z8F)
KGUA_MYCTU
[Raw transfer]




LGP_G_7(2F3T)
KGUA_ECOLI
[Raw transfer]




LGP_G_7(2F3T)
KGUA_ECOLI
[Raw transfer]




LGP_G_7(2F3T)
KGUA_ECOLI
[Raw transfer]




LGP_G_7(2F3T)
KGUA_ECOLI
[Raw transfer]




ADP_C_3(1LVG)
KGUA_MOUSE
[Raw transfer]




ADP_C_3(1LVG)
KGUA_MOUSE
[Raw transfer]




EPE_G_7(1Z6G)
?
[Raw transfer]




EPE_G_7(1Z6G)
?
[Raw transfer]




35 HHSearch 93.41100%-108 - C1 -3TAU - KGUA_LISMO -
1 PsiBlast_PDB 92.3795%-108 - C1 -3TAU - KGUA_LISMO -
2 PsiBlast_PDB 80.0662%-103 - C1 -4QRH - ? -
23 PsiBlast_CBE 79.3662%-103 - C1 -4QRH 10.5 ?
22 PsiBlast_CBE 79.1262%-101 - C1 -4QRH 10.6 ?
21 PsiBlast_CBE 78.6462%-101 - C1 -4QRH 10.4 ?
24 PsiBlast_CBE 78.0362%-109 - C1 -2J41 7.3 KGUA_STAAC
25 PsiBlast_CBE 77.8862%-107 - C1 -2J41 7.5 KGUA_STAAC
46 HHSearch 76.5738%-101 - C1 -1ZNW - KGUA_MYCTU -
27 PsiBlast_CBE 76.4541% -88 - C1 -2F3T 2.8 KGUA_ECOLI
26 PsiBlast_CBE 76.2762%-108 - C1 -2J41 7.2 KGUA_STAAC
4 PsiBlast_PDB 75.9941% -86 - C1 -2AN9 5.9 KGUA_ECOLI
47 HHSearch 75.5141% -94 - C1 -1S96 - KGUA_ECOLI -
29 PsiBlast_CBE 75.1441% -92 - C1 -2F3T 3.5 KGUA_ECOLI
14 PsiBlast_PDB 74.8440% -89 - C1 -1ZNZ 3.7 KGUA_MYCTU
31 PsiBlast_CBE 74.7541% -87 - C1 -2AN9 6.5 KGUA_ECOLI
15 PsiBlast_PDB 74.7139% -91 - C1 -1Z8F 3.4 KGUA_MYCTU
9 PsiBlast_PDB 74.7040% -92 - C1 -1S96 - KGUA_ECOLI -
13 PsiBlast_PDB 74.5840% -92 - C1 -1ZNY 3.1 KGUA_MYCTU
8 PsiBlast_PDB 74.5841% -89 - C1 -2F3T 3.4 KGUA_ECOLI
28 PsiBlast_CBE 74.4841% -89 - C1 -2F3T 4.0 KGUA_ECOLI
12 PsiBlast_PDB 74.4740% -92 - C1 -1ZNX 4.7 KGUA_MYCTU
30 PsiBlast_CBE 72.8441% -90 - C1 -2F3R 8.7 KGUA_ECOLI
10 PsiBlast_PDB 72.3540% -93 - C1 -1S4Q 3.5 KGUA_MYCTU
19 PsiBlast_PDB 72.3138% -75 - C1 -1GKY 7.4 KGUA_YEAST
7 PsiBlast_PDB 72.2941% -89 - C1 -2F3R 9.7 KGUA_ECOLI
41 HHSearch 72.1136% -78 * C1 *1EX7 7.0 KGUA_YEAST
5 PsiBlast_PDB 72.1041% -80 - C1 -2ANB 5.8 KGUA_ECOLI
16 PsiBlast_PDB 70.2837% -88 - C1 -3TR0 6.6 KGUA_COXBU
18 PsiBlast_PDB 70.2138% -75 - C1 -1EX7 7.0 KGUA_YEAST
37 HHSearch 69.7235% -85 - C1 -3TR0 6.6 KGUA_COXBU
33 PsiBlast_CBE 67.7836% -68 - C1 -1LVG 7.1 KGUA_MOUSE
44 HHSearch 66.5631% -80 - C1 -1Z6G 3.3 ?
36 HHSearch 66.0734% -74 - C1 -2QOR 8.8 ?
38 HHSearch 66.0436% -68 - C1 -1LVG 7.1 KGUA_MOUSE
34 PsiBlast_CBE 59.2834% -68 - C1 -1Z6G 3.3 ?