@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo1838: (2016-03-29 )
MKNLLSMEALTVHEIEHLLEQAAQFKRGKKATFNEQTFAVNMFFEPSTRTHTSFEVAEKKLGVEVVSFDAASSSMTKGETLYDTLLTMQAVGVNVAVIRHSEENYYAGLEKLDIAIVNGGDGCGEHPSQSLLDLFTIKEQFGTFQGLKVAIAGDIRHSRVANSNMKVLKRLGAELFFSGPREWFDESYLAYGTYLPVDEIVEKVDVMMLLRVQHERHSGTDEFTKESYHEKFGLTEDRAKKLKEDAIIMHPSPVNRDVEIADSLVESEKSRIVTQMTNGVFIRMAILEAILKEQEMRAKLCTY

Atome Classification :

(49 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

PAL_A_5(4KGX)
?
[Raw transfer]



PAL_A_5(4KH1)
?
[Raw transfer]



PAL_A_6(1EKX)
PYRB_ECOLI
[Raw transfer]



PAL_C_8(4KGV)
?
[Raw transfer]



6PR_A_8(2H3E)
PYRB_ECOLI
[Raw transfer]



PAL_C_10(4KH0)
?
[Raw transfer]



PAL_C_11(4KH1)
?
[Raw transfer]



PAL_B_5(4BJH)
PYRB_AQUAE
[Raw transfer]



PAL_C_8(4F04)
PYRB_ECOLI
[Raw transfer]



PAL_A_5(4KGV)
?
[Raw transfer]



PAL_C_8(1EKX)
PYRB_ECOLI
[Raw transfer]



PAL_A_5(4F04)
PYRB_ECOLI
[Raw transfer]



PAL_A_5(4KH0)
?
[Raw transfer]



PAL_D_4(1ML4)
PYRB_PYRAB
[Raw transfer]



PAL_D_4(1ML4)
PYRB_PYRAB
[Raw transfer]



PAL_C_8(4KGX)
?
[Raw transfer]



6PR_C_7(2H3E)
PYRB_ECOLI
[Raw transfer]



PAL_B_7(1EKX)
PYRB_ECOLI
[Raw transfer]



1IP_A_7(2IPO)
PYRB_ECOLI
[Raw transfer]



1IP_C_9(2IPO)
PYRB_ECOLI
[Raw transfer]



CP_A_4(3R7F)
PYRB_BACSU
[Raw transfer]



CP_A_4(3R7F)
PYRB_BACSU
[Raw transfer]



EOP_A_7(2FZC)
PYRB_ECOLI
[Raw transfer]



CP_C_16(3R7F)
PYRB_BACSU
[Raw transfer]



CP_B_11(3R7F)
PYRB_BACSU
[Raw transfer]



EOB_C_10(2FZG)
PYRB_ECOLI
[Raw transfer]



EOB_A_9(2FZG)
PYRB_ECOLI
[Raw transfer]



EOP_C_8(2FZC)
PYRB_ECOLI
[Raw transfer]



EOZ_C_8(2FZK)
PYRB_ECOLI
[Raw transfer]



EOZ_A_7(2FZK)
PYRB_ECOLI
[Raw transfer]



FLC_B_5(3D6N)
PYRB_AQUAE
[Raw transfer]



AL0_G_9(2AIR)
PYRB_ECOLI
[Raw transfer]



AL0_A_10(2AIR)
PYRB_ECOLI
[Raw transfer]



NCD_G_10(1R0C)
PYRB_ECOLI
[Raw transfer]



NCD_A_9(1R0C)
PYRB_ECOLI
[Raw transfer]



CP_C_13(1ZA2)
PYRB_ECOLI
[Raw transfer]



CP_A_12(1ZA2)
PYRB_ECOLI
[Raw transfer]
27 PsiBlast_CBE 97.8857%-103 - C5 -3R7F 3.5 PYRB_BACSU
29 PsiBlast_CBE 96.4357%-103 - C5 -3R7D - PYRB_BACSU -
3 PsiBlast_PDB 96.2957%-101 - C5 -3R7F 4.5 PYRB_BACSU
26 PsiBlast_CBE 96.2657%-101 - C5 -3R7F 4.3 PYRB_BACSU
28 PsiBlast_CBE 95.9957%-102 - C5 -3R7D - PYRB_BACSU -
21 PsiBlast_CBE 94.6557% -96 - C5 -3R7L - PYRB_BACSU -
110 HHSearch 94.5958% -96 - C5 -3R7F 4.5 PYRB_BACSU
22 PsiBlast_CBE 94.1357% -96 - C5 -3R7L - PYRB_BACSU -
24 PsiBlast_CBE 93.8357% -95 - C5 -3R7L - PYRB_BACSU -
2 PsiBlast_PDB 93.7357% -99 - C5 -3R7D - PYRB_BACSU -
25 PsiBlast_CBE 93.6457% -95 - C5 -3R7L - PYRB_BACSU -
4 PsiBlast_PDB 93.4757% -96 - C5 -3R7L - PYRB_BACSU -
23 PsiBlast_CBE 93.2257% -97 - C5 -3R7L - PYRB_BACSU -
12 PsiBlast_PDB 78.9331% -80 - C5 -1EKX 7.6 PYRB_ECOLI
18 PsiBlast_PDB 78.5231% -85 - C5 -1RAF - PYRB_ECOLI -
6 PsiBlast_PDB 78.3940% -86 - C5 -4BJH 6.1 PYRB_AQUAE
16 PsiBlast_PDB 78.2731% -83 - C5 -1RAD - PYRB_ECOLI -
54 PsiBlast_CBE 78.1231% -81 - C5 -2FZK 2.3 PYRB_ECOLI
44 PsiBlast_CBE 78.1231% -76 - C5 -4KGV 7.9 ?
20 PsiBlast_PDB 78.1231% -84 - C5 -1RAH - PYRB_ECOLI -
53 PsiBlast_CBE 78.0231% -76 - C5 -2H3E 7.3 PYRB_ECOLI
33 PsiBlast_CBE 77.9031% -79 - C5 -1EKX 7.7 PYRB_ECOLI
34 PsiBlast_CBE 77.6231% -80 - C5 -1EKX 7.5 PYRB_ECOLI
43 PsiBlast_CBE 77.4331% -76 - C5 -4KGV 8.0 ?
51 PsiBlast_CBE 77.4131% -78 - C5 -2IPO 6.1 PYRB_ECOLI
36 PsiBlast_CBE 77.3831% -75 - C5 -4KH1 7.8 ?
58 PsiBlast_CBE 77.3231% -82 - C5 -2FZC 2.2 PYRB_ECOLI
37 PsiBlast_CBE 77.2531% -79 - C5 -4KH0 8.0 ?
35 PsiBlast_CBE 77.2231% -77 - C5 -4KH1 7.9 ?
42 PsiBlast_CBE 77.1831% -76 - C5 -4KGX 8.0 ?
46 PsiBlast_CBE 77.0931% -78 - C5 -4F04 7.8 PYRB_ECOLI
5 PsiBlast_PDB 76.9640% -79 - C5 -3D6N 2.4 PYRB_AQUAE
38 PsiBlast_CBE 76.8131% -76 - C5 -4KH0 8.1 ?
63 PsiBlast_CBE 76.6431% -83 - C5 -1ZA2 2.8 PYRB_ECOLI
56 PsiBlast_CBE 76.5131% -84 - C5 -2FZG 2.9 PYRB_ECOLI
47 PsiBlast_CBE 76.3931% -78 - C5 -4F04 8.0 PYRB_ECOLI
65 PsiBlast_CBE 76.2831% -80 - C5 -1R0C 3.6 PYRB_ECOLI
41 PsiBlast_CBE 76.2031% -75 - C5 -4KGX 7.9 ?
57 PsiBlast_CBE 76.1431% -78 - C5 -2FZG 5.1 PYRB_ECOLI
8 PsiBlast_PDB 75.8232% -87 - C5 -1ML4 7.9 PYRB_PYRAB
64 PsiBlast_CBE 75.7931% -80 - C5 -1R0C 3.5 PYRB_ECOLI
52 PsiBlast_CBE 75.6331% -75 - C5 -2H3E 7.3 PYRB_ECOLI
61 PsiBlast_CBE 75.6131% -82 - C5 -2AIR 3.1 PYRB_ECOLI
50 PsiBlast_CBE 75.4731% -78 - C5 -2IPO 6.5 PYRB_ECOLI
60 PsiBlast_CBE 75.2631% -78 - C5 -2AIR 2.9 PYRB_ECOLI
62 PsiBlast_CBE 74.9331% -80 - C5 -1ZA2 2.9 PYRB_ECOLI
59 PsiBlast_CBE 74.5031% -77 - C5 -2FZC 3.4 PYRB_ECOLI
116 HHSearch 73.6331% -84 * C5 *1ML4 7.9 PYRB_PYRAB
55 PsiBlast_CBE 73.2931% -79 - C5 -2FZK 3.8 PYRB_ECOLI