@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo1849: (2016-03-29 )
MEIQGLTIAYKQKVAIDNVTLQIASGKLTGIVGPNGAGKSTLLKGMMGLIPREQGQVTLADKPLTYWRKKIAYVPQRSEVDLTFPITVFDMVLLGTYPALGLIKRPGKKEKQLALDALEQVEMTGFMKRQIGELSGGQLQRVFIARALAQHAEIFFLDEPFAGIDMTSEALIMRLLKKLRDNGKTIVVVHHDFHKVAAYFDDIILLNKKLVAHGPVEQTFTEEKIQFAYGDAPVAFAAGV

Atome Classification :

(29 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATP_A_5(1L2T)
Y796_METJA
[Raw transfer]




ATP_B_6(1L2T)
Y796_METJA
[Raw transfer]




ANP_A_6(4ZIR)
ECFA2_THEMA
[Raw transfer]




ADP_A_3(3TIF)
Y796_METJA
[Raw transfer]




ADP_B_8(3TIF)
Y796_METJA
[Raw transfer]




ADP_B_9(4HLU)
ECFA2_THEMA
[Raw transfer]




ADP_A_3(1F3O)
Y796_METJA
[Raw transfer]




ADP_A_5(4HLU)
ECFA2_THEMA
[Raw transfer]




ADP_A_2(4U00)
?
[Raw transfer]




GOL_B_11(4P33)
LPTB_ECOLI
[Raw transfer]




LMT_B_4(4MKI)
ECFA2_CALS4
[Raw transfer]




LMT_A_7(4MKI)
ECFA2_CALS4
[Raw transfer]




1 PsiBlast_PDB 89.1433%-131 - C1 -4G1U - HMUV_YERPE -
21 PsiBlast_CBE 87.4133%-131 - C1 -4G1U - HMUV_YERPE -
23 PsiBlast_CBE 86.2031%-117 - C1 -4QC2 - ? -
3 PsiBlast_PDB 85.5831%-118 - C1 -4QC2 - ? -
2 PsiBlast_PDB 84.5431%-125 - C1 -4P32 - LPTB_ECOLI -
4 PsiBlast_PDB 84.2430%-124 - C1 -4P33 2.5 LPTB_ECOLI
42 Fugue 84.2131%-110 - C1 -1Z47 - ? -
22 PsiBlast_CBE 83.3231%-127 - C1 -4P32 - LPTB_ECOLI -
37 Fugue 82.6628%-124 - C1 -3TUZ - METN_ECOLI -
51 HHSearch 82.0129%-119 * C1 *3TUI - METN_ECOLI -
63 HHSearch 81.9929%-134 - C1 -2NQ2 - Y1470_HAEIN -
6 PsiBlast_PDB 79.5328%-141 - C1 -2NQ2 - Y1470_HAEIN -
16 PsiBlast_PDB 79.4827%-132 - C1 -3GFO - ECFA3_CLOP1 -
56 HHSearch 77.2827%-126 - C1 -3GFO - ECFA3_CLOP1 -
61 HHSearch 76.6029%-121 - C1 -1B0U - HISP_SALTY -
8 PsiBlast_PDB 76.4335%-115 - C1 -3TIF 4.4 Y796_METJA
62 HHSearch 75.8529%-132 - C1 -2IHY - ? -
17 PsiBlast_PDB 75.7831%-123 - C1 -3DHW - METN_ECOLI -
20 PsiBlast_PDB 75.4231%-114 - C1 -4HUQ - ECFA1_LACBA -
25 PsiBlast_CBE 74.9935%-121 - C1 -3TIF 4.6 Y796_METJA
7 PsiBlast_PDB 74.4135%-113 - C1 -1L2T 4.6 Y796_METJA
24 PsiBlast_CBE 74.1835%-119 - C1 -1L2T 4.6 Y796_METJA
9 PsiBlast_PDB 73.2735%-117 - C1 -1F3O 4.1 Y796_METJA
13 PsiBlast_PDB 72.1330%-130 - C1 -4U00 4.3 ?
27 PsiBlast_CBE 68.2932%-126 - C1 -4MKI 2.2 ECFA2_CALS4
19 PsiBlast_PDB 67.5732%-123 - C1 -4MKI 2.4 ECFA2_CALS4
30 PsiBlast_CBE 66.4131%-122 - C1 -4HLU 4.6 ECFA2_THEMA
29 PsiBlast_CBE 65.9431%-123 - C1 -4HLU 4.8 ECFA2_THEMA
28 PsiBlast_CBE 63.4731%-128 - C1 -4ZIR 4.7 ECFA2_THEMA