@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo1871: (2016-03-29 )
MNQSETKALEALQNGSDIRGIAIATEKYQITLTDERVEKIAYGFAKWLKEEKKVEGQAKVAIGHDSRLSAERLKAALVKGLTFAGIDVVDVGLATTPAMFMATQYEDYDCDAGIMITASHLPFMYNGLKLFTKSGGAEHEDIDYIVAHADKSFIENGLNLGKVTKQDLLSTYAADLTDKIRAGITDAADKMKPLQGSHIIVDAGNGAGGFFAEKVLAELGADISESQFLDPDGNFPNHIPNPDNEEAMASLKKAVLASGADLGVIFDTDVDRAAIMDKNGESLNRNPLIAVISSIILEEKPGTTIVTDSTTSGHLQAFIEAKGGKQHRFKRGYRNVINEALRLNANGTPSEIAIEVSGHAALKENYFLDDGAYLIAKILMTYATLRKNGQDLPDLIADLKEPAESEEIRLSITANDFKAYGKEALADFLTFVEADPDMELEPVNQEGIRVNTKGALGEGWFLLRMSLHEPVMPMNLESDEAGGIRKVKDRLAGFFATKADLKM

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

G16_X_2(2FKM)
ALGC_PSEAE
[Raw transfer]



G6P_X_2(1P5G)
ALGC_PSEAE
[Raw transfer]



G1P_X_2(1P5D)
ALGC_PSEAE
[Raw transfer]



M1P_X_2(1PCJ)
ALGC_PSEAE
[Raw transfer]



X1P_X_3(2H5A)
ALGC_PSEAE
[Raw transfer]



M6P_X_3(1PCM)
ALGC_PSEAE
[Raw transfer]



G1P_X_2(3BKQ)
ALGC_PSEAE
[Raw transfer]



R1P_X_2(2H4L)
ALGC_PSEAE
[Raw transfer]



G16_A_2(2FKF)
ALGC_PSEAE
[Raw transfer]



TLA_X_3(1K2Y)
ALGC_PSEAE
[Raw transfer]



TLA_A_3(4MRQ)
ALGC_PSEAE
[Raw transfer]
46 Fugue 94.7228% -67 - C1 -1K2Y - ALGC_PSEAE -
22 PsiBlast_CBE 94.7032% -68 - C1 -1WQA - ? -
23 PsiBlast_CBE 94.6232% -69 - C1 -1WQA - ? -
13 PsiBlast_PDB 94.5932% -69 - C1 -1WQA - ? -
1 PsiBlast_PDB 94.5728% -59 - C1 -4MRQ 3.6 ALGC_PSEAE
2 PsiBlast_PDB 94.5328% -61 - C1 -1K2Y 2.8 ALGC_PSEAE
12 PsiBlast_PDB 94.2728% -64 - C1 -3C04 - ALGC_PSEAE -
11 PsiBlast_PDB 94.2628% -60 - C1 -3BKQ 3.9 ALGC_PSEAE
21 PsiBlast_CBE 93.8032% -68 - C1 -1WQA - ? -
10 PsiBlast_PDB 93.4628% -63 - C1 -2H5A 3.8 ALGC_PSEAE
9 PsiBlast_PDB 93.4128% -61 - C1 -2H4L 3.3 ALGC_PSEAE
7 PsiBlast_PDB 93.3628% -64 - C1 -1PCJ 3.1 ALGC_PSEAE
8 PsiBlast_PDB 93.0928% -62 - C1 -1PCM 5.1 ALGC_PSEAE
14 PsiBlast_PDB 93.0528% -61 - C1 -4IL8 - ALGC_PSEAE -
25 HHSearch 92.9929% -66 - C1 -1WQA - ? -
5 PsiBlast_PDB 92.9328% -63 - C1 -1P5D 4.3 ALGC_PSEAE
6 PsiBlast_PDB 92.8128% -60 - C1 -1P5G 3.5 ALGC_PSEAE
29 HHSearch 92.7128% -70 - C1 -3UW2 - ? -
4 PsiBlast_PDB 92.6028% -60 - C1 -2FKM 3.7 ALGC_PSEAE
3 PsiBlast_PDB 92.5728% -61 - C1 -2FKF 3.6 ALGC_PSEAE