@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo1874: (2016-03-29 )
MKQYLDLEKYVLENGTQKGDRTGTGTISTFGYQMRFDLQEGFPIMTTKRVPFKLVVSELLWFLHGDTNIRYLLQHNNNIWNEWAFERFVKSDDYKGEDMTDFGLRAERDPAFKEVYQAEMEKFKTRIIEDEAFATKYGELGNIYGKQWREWKTSQGETIDQLADLIEMIKTNPNSRRLIVSAWNPEDIPNMALPPCHSLFQFYVADGKLSCQLYQRSADIFLGVPFNIASYALLTHLIAREVGLDVGEFIHTMGDAHLYNNHIEQVKEQLSRTPHALPKLVLSDKPATIFDFEVADISLDGYNPDPSIKAPISV

Atome Classification :

(87 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

U_E_5(1BO8)
TYSY_LACCA
[Raw transfer]




UMP_A_2(1TSX)
TYSY_LACCA
[Raw transfer]




UMP_A_2(2G8A)
TYSY_LACCA
[Raw transfer]




NDU_A_3(3B5B)
TYSY_ECOLI
[Raw transfer]




UMP_A_2(2G86)
TYSY_LACCA
[Raw transfer]




UMP_A_2(2G89)
TYSY_LACCA
[Raw transfer]




UMP_E_5(1BPJ)
TYSY_LACCA
[Raw transfer]




UMP_A_2(2TDM)
TYSY_LACCA
[Raw transfer]




U_A_2(1BO7)
TYSY_LACCA
[Raw transfer]




UMP_A_2(3C06)
TYSY_LACCA
[Raw transfer]




UMP_A_3(3BNZ)
TYSY_LACCA
[Raw transfer]




UMP_C_3(1TSY)
TYSY_LACCA
[Raw transfer]




UMP_A_2(2G8D)
TYSY_LACCA
[Raw transfer]




FOZ_B_7(3UWL)
TYSY_ENTFA
[Raw transfer]




FOZ_D_17(3UWL)
TYSY_ENTFA
[Raw transfer]




UMP_A_3(4DQ1)
TYSY_STAAM
[Raw transfer]




UMP_C_7(1J3K)
?
[Raw transfer]




DCM_C_3(1NJA)
TYSY_LACCA
[Raw transfer]




UMP_B_4(4DQ1)
TYSY_STAAM
[Raw transfer]




UFP_C_3(1TDB)
TYSY_LACCA
[Raw transfer]




UMP_C_3(1VZB)
TYSY_LACCA
[Raw transfer]




UMP_C_3(1JMF)
TYSY_LACCA
[Raw transfer]




UMP_C_3(1JMI)
TYSY_LACCA
[Raw transfer]




UMP_A_2(3C0A)
TYSY_LACCA
[Raw transfer]




UMP_C_3(1TSV)
TYSY_LACCA
[Raw transfer]




THF_B_7(4O7U)
TYSY_ENTFA
[Raw transfer]




DCM_C_3(1NJC)
TYSY_LACCA
[Raw transfer]




UMP_E_5(1BP6)
TYSY_LACCA
[Raw transfer]




UMP_A_3(3IK1)
TYSY_LACCA
[Raw transfer]




DCM_C_3(1NJE)
TYSY_LACCA
[Raw transfer]




UMP_A_5(3QG2)
?
[Raw transfer]




UMP_C_3(1VZA)
TYSY_LACCA
[Raw transfer]




UMP_E_5(1BP0)
TYSY_LACCA
[Raw transfer]




UFP_C_3(1VZC)
TYSY_LACCA
[Raw transfer]




UMP_C_3(1NJD)
TYSY_LACCA
[Raw transfer]




NDN_B_4(3B5B)
TYSY_ECOLI
[Raw transfer]




UMP_C_3(1TDC)
TYSY_LACCA
[Raw transfer]




UMP_A_3(2VET)
TYSY_ECOLI
[Raw transfer]




UMP_A_3(3IJZ)
TYSY_LACCA
[Raw transfer]




UMP_C_3(1JMG)
TYSY_LACCA
[Raw transfer]




UMP_A_3(3IK0)
TYSY_LACCA
[Raw transfer]




TMF_E_5(1LCE)
TYSY_LACCA
[Raw transfer]




PFG_A_4(2BBQ)
TYSY_ECOLI
[Raw transfer]




CB3_E_5(1TVU)
TYSY_LACCA
[Raw transfer]




UMP_C_3(1NJB)
TYSY_LACCA
[Raw transfer]




UMP_C_3(1THY)
TYSY_LACCA
[Raw transfer]




CB3_E_5(1TVV)
TYSY_LACCA
[Raw transfer]




D16_A_7(3NRR)
?
[Raw transfer]




UMP_C_3(1JMH)
TYSY_LACCA
[Raw transfer]




SS7_D_11(4O7U)
TYSY_ENTFA
[Raw transfer]




PFG_B_6(2BBQ)
TYSY_ECOLI
[Raw transfer]




D16_F_6(2KCE)
TYSY_ECOLI
[Raw transfer]




CB3_A_4(2TSC)
TYSY_ECOLI
[Raw transfer]




C00_A_3(3BYX)
TYSY_LACCA
[Raw transfer]




THF_C_3(2TDD)
TYSY_LACCA
[Raw transfer]




CB3_B_6(2TSC)
TYSY_ECOLI
[Raw transfer]




D16_D_4(2KCE)
TYSY_ECOLI
[Raw transfer]




CB3_E_5(1TVW)
TYSY_LACCA
[Raw transfer]




F89_I_9(1F28)
TYSY_PNECA
[Raw transfer]




20C_A_2(3IK1)
TYSY_LACCA
[Raw transfer]




C00_A_3(3BZ0)
TYSY_LACCA
[Raw transfer]




7C1_A_2(3IK0)
TYSY_LACCA
[Raw transfer]




CIT_A_5(3V8H)
?
[Raw transfer]




C16_A_4(3BNZ)
TYSY_LACCA
[Raw transfer]




MR2_E_5(1TSM)
TYSY_LACCA
[Raw transfer]




A15_A_3(1TSL)
TYSY_LACCA
[Raw transfer]




THG_A_4(3BHL)
TYSY_ECOLI
[Raw transfer]




F89_A_4(1TLC)
TYSY_ECOLI
[Raw transfer]




CB3_A_6(1TDU)
TYSY_ECOLI
[Raw transfer]




THG_A_3(3BHR)
TYSY_ECOLI
[Raw transfer]




MTX_B_6(1AXW)
TYSY_ECOLI
[Raw transfer]




CB3_E_5(1TRG)
TYSY_ECOLI
[Raw transfer]




THG_B_8(3BHL)
TYSY_ECOLI
[Raw transfer]




MTX_A_4(1AXW)
TYSY_ECOLI
[Raw transfer]




F89_A_6(1TSD)
TYSY_ECOLI
[Raw transfer]




UMP_C_3(1BID)
TYSY_ECOLI
[Raw transfer]




CB3_B_7(4KNZ)
TYSY_ECOLI
[Raw transfer]




DUR_E_5(1BDU)
TYSY_ECOLI
[Raw transfer]




DDU_E_5(1AOB)
TYSY_ECOLI
[Raw transfer]




F89_B_6(1TLC)
TYSY_ECOLI
[Raw transfer]




CB3_B_6(1AN5)
TYSY_ECOLI
[Raw transfer]




CB3_A_5(1AN5)
TYSY_ECOLI
[Raw transfer]




F89_F_6(1SYN)
TYSY_ECOLI
[Raw transfer]




F89_B_8(1TSD)
TYSY_ECOLI
[Raw transfer]




F89_E_4(1SYN)
TYSY_ECOLI
[Raw transfer]




CB3_B_8(1DDU)
TYSY_ECOLI
[Raw transfer]




NDU_A_4(3B9H)
TYSY_ECOLI
[Raw transfer]




CB3_B_8(1TDU)
TYSY_ECOLI
[Raw transfer]




CB3_A_6(1DDU)
TYSY_ECOLI
[Raw transfer]




38 PsiBlast_CBE 97.3869%-126 - C7 -1TSV 5.4 TYSY_LACCA
25 PsiBlast_CBE 97.3670%-123 - C7 -3UWL 5.3 TYSY_ENTFA
23 PsiBlast_CBE 97.3070%-121 - C7 -4O7U 6.7 TYSY_ENTFA
40 PsiBlast_CBE 97.2369%-126 - C7 -1BO7 5.5 TYSY_LACCA
55 PsiBlast_CBE 97.2268%-125 - C7 -1BP6 5.1 TYSY_LACCA
37 PsiBlast_CBE 97.0769%-125 - C7 -1TSW - TYSY_LACCA -
4 PsiBlast_PDB 97.0369%-123 - C7 -1NJE 4.2 TYSY_LACCA
26 PsiBlast_CBE 96.9370%-123 - C7 -3UWL 5.9 TYSY_ENTFA
15 PsiBlast_PDB 96.8969%-129 - C7 -3IJZ 3.6 TYSY_LACCA
18 PsiBlast_PDB 96.8669%-125 - C7 -1TSY 4.6 TYSY_LACCA
50 PsiBlast_CBE 96.6369%-124 - C7 -1JMH 3.4 TYSY_LACCA
36 PsiBlast_CBE 96.6169%-124 - C7 -1TSX 4.9 TYSY_LACCA
39 PsiBlast_CBE 96.5069%-125 - C7 -1BO8 4.4 TYSY_LACCA
45 PsiBlast_CBE 96.4669%-124 - C7 -2G89 4.7 TYSY_LACCA
47 PsiBlast_CBE 96.4469%-123 - C7 -1NJB 3.8 TYSY_LACCA
8 PsiBlast_PDB 96.4269%-122 - C7 -2TDM 5.7 TYSY_LACCA
6 PsiBlast_PDB 96.4069%-126 - C7 -1TSL 5.1 TYSY_LACCA
32 PsiBlast_CBE 96.3169%-127 - C7 -1NJC 4.7 TYSY_LACCA
21 PsiBlast_CBE 96.2370%-120 - C7 -4O7U 5.4 TYSY_ENTFA
54 PsiBlast_CBE 96.2268%-125 - C7 -1BPJ 3.8 TYSY_LACCA
31 PsiBlast_CBE 96.2069%-125 - C7 -1NJD 4.7 TYSY_LACCA
48 PsiBlast_CBE 96.1669%-125 - C7 -1NJA 4.6 TYSY_LACCA
41 PsiBlast_CBE 95.9969%-126 - C7 -1JMG 3.7 TYSY_LACCA
7 PsiBlast_PDB 95.9569%-121 - C7 -1TSM 3.0 TYSY_LACCA
49 PsiBlast_CBE 95.9169%-125 - C7 -1BP0 4.7 TYSY_LACCA
46 PsiBlast_CBE 95.7169%-125 - C7 -1TVV 4.4 TYSY_LACCA
11 PsiBlast_PDB 95.6869%-128 - C7 -3BYX 4.2 TYSY_LACCA
28 PsiBlast_CBE 95.5469%-124 - C7 -1TDC 3.6 TYSY_LACCA
5 PsiBlast_PDB 95.4869%-125 - C7 -1THY 3.9 TYSY_LACCA
27 PsiBlast_CBE 95.3969%-121 - C7 -2TDD 2.9 TYSY_LACCA
20 PsiBlast_PDB 95.3969%-122 - C7 -2G86 5.6 TYSY_LACCA
43 PsiBlast_CBE 95.3569%-127 - C7 -1JMF 4.2 TYSY_LACCA
44 PsiBlast_CBE 95.3369%-122 - C7 -2G8A 5.3 TYSY_LACCA
17 PsiBlast_PDB 95.3069%-129 - C7 -3IK1 3.8 TYSY_LACCA
16 PsiBlast_PDB 95.2469%-128 - C7 -3IK0 4.1 TYSY_LACCA
42 PsiBlast_CBE 95.1969%-124 - C7 -1TVU 5.9 TYSY_LACCA
52 PsiBlast_CBE 95.1268%-125 - C7 -1VZB 4.2 TYSY_LACCA
35 PsiBlast_CBE 95.0969%-125 - C7 -1JMI 4.3 TYSY_LACCA
34 PsiBlast_CBE 95.0569%-119 - C7 -1TVW 5.0 TYSY_LACCA
29 PsiBlast_CBE 94.8969%-125 - C7 -1TDB 3.1 TYSY_LACCA
51 PsiBlast_CBE 94.7168%-127 - C7 -1VZC 4.4 TYSY_LACCA
3 PsiBlast_PDB 94.2569%-120 - C7 -1LCE 4.9 TYSY_LACCA
33 PsiBlast_CBE 94.0669%-122 - C7 -2G8D 4.8 TYSY_LACCA
12 PsiBlast_PDB 93.9969%-130 - C7 -3BZ0 4.2 TYSY_LACCA
10 PsiBlast_PDB 93.7869%-123 - C7 -3BNZ 4.0 TYSY_LACCA
57 PsiBlast_CBE 93.6763%-127 - C7 -4DQ1 4.8 TYSY_STAAM
53 PsiBlast_CBE 93.5068%-120 - C7 -1VZA 4.3 TYSY_LACCA
13 PsiBlast_PDB 92.6069%-123 - C7 -3C06 4.1 TYSY_LACCA
14 PsiBlast_PDB 91.0169%-132 - C7 -3C0A 4.1 TYSY_LACCA
56 PsiBlast_CBE 89.6263%-128 - C7 -4DQ1 5.2 TYSY_STAAM
60 PsiBlast_CBE 81.7750%-120 - C7 -2KCE 4.8 TYSY_ECOLI
105 HHSearch 81.0048%-109 - C7 -1F28 6.7 TYSY_PNECA
113 HHSearch 80.9148%-116 - C7 -3NRR 5.6 ?
86 PsiBlast_CBE 80.6449%-120 - C7 -2TSC 7.3 TYSY_ECOLI
82 PsiBlast_CBE 80.5449%-118 - C7 -3B5B 5.9 TYSY_ECOLI
62 PsiBlast_CBE 80.4850%-117 - C7 -2BBQ 7.5 TYSY_ECOLI
59 PsiBlast_CBE 80.4550%-121 - C7 -2KCE 5.9 TYSY_ECOLI
85 PsiBlast_CBE 80.3849%-123 - C7 -2TSC 7.0 TYSY_ECOLI
83 PsiBlast_CBE 80.2249%-119 - C7 -3B5B 4.8 TYSY_ECOLI
84 PsiBlast_CBE 80.0949%-120 - C7 -2VET 4.7 TYSY_ECOLI
61 PsiBlast_CBE 80.0650%-122 - C7 -2BBQ 7.2 TYSY_ECOLI
104 HHSearch 79.0645%-118 - C7 -1J3K 5.4 ?
106 HHSearch 78.7145%-119 - C7 -3QG2 4.6 ?
102 HHSearch 77.6838%-109 - C7 -3V8H 3.2 ?
80 PsiBlast_CBE 56.4050% -11 - C7 -1AN5 4.0 TYSY_ECOLI
81 PsiBlast_CBE 56.3750% -11 - C7 -1AN5 4.2 TYSY_ECOLI
71 PsiBlast_CBE 56.3050% -16 - C7 -1SYN 4.3 TYSY_ECOLI
67 PsiBlast_CBE 56.2750% -12 - C7 -1TLC 4.3 TYSY_ECOLI
87 PsiBlast_CBE 56.2049% -12 - C7 -4KNZ 4.7 TYSY_ECOLI
70 PsiBlast_CBE 56.1750% -17 - C7 -1TDU 4.2 TYSY_ECOLI
95 PsiBlast_CBE 56.0149% -9 - C7 -3BHR 4.2 TYSY_ECOLI
97 PsiBlast_CBE 55.7149% -10 - C7 -3BHL 5.0 TYSY_ECOLI
96 PsiBlast_CBE 55.6849% -10 - C7 -3BHL 4.8 TYSY_ECOLI
76 PsiBlast_CBE 55.6850% -13 - C7 -1BDU 2.5 TYSY_ECOLI
72 PsiBlast_CBE 55.6350% -13 - C7 -1SYN 5.5 TYSY_ECOLI
78 PsiBlast_CBE 55.6150% -16 - C7 -1AXW 4.7 TYSY_ECOLI
65 PsiBlast_CBE 55.5350% -14 - C7 -1TRG 4.1 TYSY_ECOLI
79 PsiBlast_CBE 55.5150% -13 - C7 -1AOB 3.4 TYSY_ECOLI
69 PsiBlast_CBE 55.4150% -14 - C7 -1TDU 3.1 TYSY_ECOLI
66 PsiBlast_CBE 55.3950% -15 - C7 -1TLC 4.4 TYSY_ECOLI
75 PsiBlast_CBE 55.3550% -12 - C7 -1BID 2.9 TYSY_ECOLI
74 PsiBlast_CBE 55.2750% -10 - C7 -1DDU 3.9 TYSY_ECOLI
64 PsiBlast_CBE 55.0950% -14 - C7 -1TSD 4.5 TYSY_ECOLI
63 PsiBlast_CBE 54.9950% -15 - C7 -1TSD 5.5 TYSY_ECOLI
77 PsiBlast_CBE 54.9350% -15 - C7 -1AXW 3.8 TYSY_ECOLI
98 PsiBlast_CBE 54.8249% -10 - C7 -3B9H 0.6 TYSY_ECOLI
73 PsiBlast_CBE 54.6350% -10 - C7 -1DDU 3.8 TYSY_ECOLI