@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo1875: (2016-03-29 )
MKQLKVENLTKTYGEKSLFENISLTITEGERIGLIGVNGTGKSTLLQIISGSESGDKGTVTKAKDYTIGYLAQDPAFNEEDTVLAAVFDGDTAALRAMRKYEEVLLAMSLDAENTKLHDAYTAASQEMDASAAWDMNTEAKTILERLGITDLTAKISALSGGQRKRVGLAQVLIETPDLLILDEPTNHLDFQSIRWLEEYLNRFKGAVLLVTHDRYFLDRVTNHMVELDRGSAYRYVGNYEKFMESKAIRMENEVRESEKNKNLYRKELAWMRRGPQGRATKQNARQDRFHDLEKKVKIKTDDSELAIDFVTSRLGKDVFELKNLEKRFDEKQVLQDFSLIIQPGERLGITGNNGTGKSTLLNMLAGKLAPDAGEVVTGQTVQIGYYTQQNEEMDPDMRMIAYLQEAGEQVTTSGGEVISVSAMLERFLFPPNSHGKKIGSLSGGEKRRLFLLRILMERPNVLLLDEPTNDLDTQTLTVLEDYLESFNGTVITVSHDRYFLDKVVNKLLVFRAIGEVEIFYGEYSDYLKELEAKGKPAKSMKKMANTSVEKSSPEKKEKVKLTYQEQLEWDGIEDAISKLEKDIESLNETLEQTGADFTKAAEISGFITAKETELEQMMERWEFLSQYAE

Atome Classification :

(23 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATP_A_3(3FVQ)
FBPC_NEIG1
[Raw transfer]



ATP_B_6(3FVQ)
FBPC_NEIG1
[Raw transfer]



ANP_A_6(4ZIR)
ECFA2_THEMA
[Raw transfer]



ADP_B_9(4HLU)
ECFA2_THEMA
[Raw transfer]



ADP_A_5(4HLU)
ECFA2_THEMA
[Raw transfer]



ADP_B_3(3J15)
?
[Raw transfer]



ADP_A_6(3BK7)
?
[Raw transfer]
2 PsiBlast_PDB 87.3837% -70 - C1 -4FIN - ETTA_ECOLI -
1 PsiBlast_PDB 87.2237% -59 - C1 -3J5S - ETTA_ECOLI -
39 HHSearch 82.5330% -87 - C- -2IW3 - EF3A_YEAST -
43 HHSearch 64.4421% -60 - C1 -3OZX - ? -
30 Fugue 60.5020% -24 - C1 -3J16 - RLI1_YEAST -
58 HHSearch 59.2630% -82 - C1 -3RLF - MALK_ECOLI -
4 PsiBlast_PDB 57.2725% -76 - C1 -2IX3 - EF3A_YEAST -
7 PsiBlast_PDB 56.8325% -42 - C1 -3BK7 4.9 ?
3 PsiBlast_PDB 56.2925% -76 - C1 -2IWH - EF3A_YEAST -
5 PsiBlast_PDB 56.1725% -76 - C1 -2IW3 - EF3A_YEAST -
41 HHSearch 56.0920% -49 - C1 -3J16 - RLI1_YEAST -
11 PsiBlast_PDB 55.5125% -54 - C1 -1YQT - ? -
8 PsiBlast_PDB 55.2725% -39 - C1 -3J15 3.7 ?
42 HHSearch 55.1523% -52 - C1 -1YQT - ? -
22 PsiBlast_CBE 55.0935% -83 - C1 -3FVQ 7.5 FBPC_NEIG1
23 PsiBlast_CBE 54.9735% -82 - C1 -3FVQ 6.7 FBPC_NEIG1
40 HHSearch 53.6523% -52 - C1 -3BK7 - ? -
61 HHSearch 51.9726% -75 - C1 -2IT1 - ? -
55 HHSearch 51.3926% -76 - C1 -3TUI - METN_ECOLI -
37 Fugue 50.7319% -31 - C1 -4F4C - PGP1_CAEEL -
21 PsiBlast_CBE 43.8231% -57 - C1 -4HLU 5.0 ECFA2_THEMA
16 PsiBlast_PDB 42.3331% -55 - C1 -4HLU 4.7 ECFA2_THEMA
15 PsiBlast_PDB 38.0631% -55 - C1 -4ZIR 5.1 ECFA2_THEMA