@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo1883: (2016-03-29 )
MNGKQVMVGGLSLLLVGAGLGAFGSTAQAATDDASVMPDISNKQVLVGYWHSWKSSGKDGYQQGTSADIALKDTPKAYNVVDVSFMKGDGVNRIPTFKPVGINDSDFRAQVGALNKEGRAVLLALGGADGHVELKAGDEEAFANEIIRQVETYGFDGLDIDLEQSAITAGDNKTVIPAALKIVKDHYKAEGKNFLITMAPEFPYLKPGSAYESYLTSLANYYDYIAPQLYNQGGDGVWVDETNQWIAQNNDTLKESFLYYMADSFINGTRGYLKIPANKFVFGLPANVDAAATGYVTDPQIVKNVFTRLQAKGTPVKGIMTWSVNWDAGKNKAGVPYNNSFSNAYGPIVGTK

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

SUGAR_A_2(4HME)
?
[Raw transfer]
-
SUGAR_A_2(3N15)
?
[Raw transfer]
-
EDO_A_4(3IAN)
?
[Raw transfer]



EDO_A_4(3IAN)
?
[Raw transfer]



SUGAR_A_10(4MB4)
?
[Raw transfer]
-
SUGAR_A_2(3N13)
?
[Raw transfer]
-
NAG_A_2(4HMD)
?
[Raw transfer]



SUGAR_A_8(4MB5)
?
[Raw transfer]
-
SUGAR_A_2(3N17)
?
[Raw transfer]
-
SUGAR_A_2(3N18)
?
[Raw transfer]
-
ACY_A_6(3N12)
?
[Raw transfer]



GOL_A_3(2UY2)
CHIT_YEAST
[Raw transfer]



EDO_A_12(3IAN)
?
[Raw transfer]



MPD_A_7(4MB3)
?
[Raw transfer]



CHQ_A_2(3N1A)
?
[Raw transfer]



PEG_A_11(4MB5)
?
[Raw transfer]



IMD_A_8(4MB3)
?
[Raw transfer]



PEG_A_6(3MU7)
?
[Raw transfer]
21 PsiBlast_CBE 95.6862% -96 - C2 -4AXN - ? -
1 PsiBlast_PDB 95.2162% -98 - C2 -4AXN - ? -
5 PsiBlast_PDB 95.0858% -99 - C2 -4HME 7.1 ?
3 PsiBlast_PDB 95.0658% -99 - C2 -4HMC - ? -
4 PsiBlast_PDB 94.8558% -97 - C2 -4HMD 3.4 ?
7 PsiBlast_PDB 93.9657% -98 - C2 -4MB4 9.8 ?
6 PsiBlast_PDB 93.9057% -97 - C2 -4MB3 3.9 ?
8 PsiBlast_PDB 93.7257% -98 - C2 -4MB5 11.0 ?
112 HHSearch 93.6261% -94 - C2 -3IAN 3.4 ?
2 PsiBlast_PDB 91.7760% -94 - C2 -3IAN 3.4 ?
113 HHSearch 74.8729% -74 - C2 -3N12 - ? -
13 PsiBlast_PDB 73.2131% -81 - C2 -3N13 5.0 ?
11 PsiBlast_PDB 73.0431% -81 - C2 -3N15 5.2 ?
9 PsiBlast_PDB 72.5631% -82 - C2 -3N11 - ? -
10 PsiBlast_PDB 72.5031% -83 - C2 -3N12 3.6 ?
15 PsiBlast_PDB 72.1430% -81 - C2 -3N1A 2.8 ?
12 PsiBlast_PDB 71.9830% -82 - C2 -3N17 5.4 ?
14 PsiBlast_PDB 71.4730% -80 - C2 -3N18 6.3 ?
16 PsiBlast_PDB 68.2526% -70 - C2 -3EBV - ? -
118 HHSearch 66.6925% -80 * C2 *3EBV - ? -