@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo1887: (2016-03-29 )
MKTFQLVATAASGLEAIVGKEVARLGYDPKVENGKVYFEGDLSAIARANLWLRVADRVKIVVGVFKATTFDELFEKTKALPWEDYLPLDAQFPVAGKSVKSTLYSVPDCQAIVKKAIVNRVSEKYRRSGRLMETGALFKLEVSILKDEVTLTIDTSGAGLHKRGYRLAQGSAPIKETMAAALVLLTSWHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQIWADARQEAEDLANYDQPLNIIGGDIDARLIEIAKQNAVEAGLGDLITFRQLQVADFQTEDEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKRMPTWSVYVLTSYELFEEVYGKKATKKRKLYNGYLRTDLYQYWGPRKPRPKKED

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

GTP_A_2(3LDU)
?
[Raw transfer]




GTP_A_2(3LDU)
?
[Raw transfer]




SAH_A_2(3LDG)
?
[Raw transfer]




18 HHSearch 99.9199%-113 - C4 -3K0B - ? -
1 PsiBlast_PDB 99.3598%-113 - C4 -3K0B - ? -
2 PsiBlast_PDB 85.6454% -97 - C4 -3LDG - ? -
19 HHSearch 85.0955% -97 - C4 -3LDG 5.7 ?
3 PsiBlast_PDB 84.6648% -97 - C4 -3LDU 6.8 ?
20 HHSearch 84.2848% -96 - C4 -3LDU 6.8 ?
42 Fugue 75.1632% -76 - C4 -3V97 - RLMKL_ECOLI -
4 PsiBlast_PDB 69.6233% -82 - C4 -3V97 - RLMKL_ECOLI -
41 Fugue 68.0926% -92 - C4 -3TM4 - ? -
15 PsiBlast_CBE 66.9033% -86 - C4 -3V97 - RLMKL_ECOLI -
23 HHSearch 65.8926% -88 - C4 -3TM4 - ? -
16 PsiBlast_CBE 65.6233% -89 - C4 -3V8V - RLMKL_ECOLI -
7 PsiBlast_PDB 64.7325% -81 - C4 -3TM5 - ? -
5 PsiBlast_PDB 63.9325% -86 - C4 -3TLJ - ? -
6 PsiBlast_PDB 63.6325% -85 - C4 -3TM4 - ? -
22 HHSearch 58.4222% -78 * C4 *3TMA - ? -
26 HHSearch 42.8418% -72 - C4 -3UFB - ? -
37 HHSearch 42.5913% -80 - C4 -2IH2 - MTTA_THEAQ -
36 HHSearch 42.5615% -78 - C4 -2B3T - PRMC_ECOLI -
31 HHSearch 41.6621% -85 - C4 -1NV8 - PRMC_THEMA -