@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo1905: (2016-03-30 )
MNDVFLKALPVLQKLTTAGFEAYFVGGSVRDYLLNRTISDVDIATSAFPEEVKEIFQSTYDTGIAHGTVTVRENNEFYEVTTFRTEGTYEDFRRPSEVKFIRSLEEDLQRRDFTMNAIAMDEHFALHDPFSGQEAIKNKAIKAVGKASERFHEDALRMMRGVRFLSQLDFQLDSETEKALESQIGLLQHTSVERITVEWLKMIKGPAIRRAMDLLLKVEMETYLPGLKGEKKALTEFGSWDWGKRTTDDAIWLGLVVTVQPNNVNAFLKAWKLPNKTIQLVSKAYQYALKMKETWLAEELYHAGKAVFSLVNELNIIRGKENNQHKLSQAYEALPIHSKKDLAITGADLLKWSGESAGPWVKETLDKLECGVLCNEINNEKNQIKRWLGYHEE

Atome Classification :

(31 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATP_B_5(4WC0)
?
[Raw transfer]



ATP_A_7(1MIW)
CCA_GEOSE
[Raw transfer]



APC_F_6(1VFG)
?
[Raw transfer]



APC_E_5(1VFG)
?
[Raw transfer]



CTP_B_8(1MIY)
CCA_GEOSE
[Raw transfer]



ATP_A_3(4WC0)
?
[Raw transfer]



CTP_A_3(4WC5)
?
[Raw transfer]



ATP_A_3(4WC4)
?
[Raw transfer]



ATP_A_3(4WC6)
?
[Raw transfer]



CTP_A_3(4WC7)
?
[Raw transfer]



CTP_B_4(4WC1)
?
[Raw transfer]



CTP_A_3(4WC1)
?
[Raw transfer]



APC_A_3(4WC2)
?
[Raw transfer]



ATP_A_3(3AQN)
?
[Raw transfer]



ATP_B_5(3AQN)
?
[Raw transfer]



GOL_B_5(3AQL)
?
[Raw transfer]
30 HHSearch 99.3146% -91 - C1 -1MIW 5.8 CCA_GEOSE
1 PsiBlast_PDB 97.9446% -88 - C1 -1MIY - CCA_GEOSE -
21 PsiBlast_CBE 97.8946% -86 - C1 -1MIY 4.8 CCA_GEOSE
2 PsiBlast_PDB 96.4745% -90 - C1 -1MIV - CCA_GEOSE -
3 PsiBlast_PDB 95.6445% -88 - C1 -1MIW - CCA_GEOSE -
55 Fugue 74.8226% -75 - C1 -3AQL - ? -
33 HHSearch 71.1427% -97 - C1 -3AQL - ? -
31 HHSearch 70.7320% -70 - C1 -3H38 - ? -
32 HHSearch 69.8519% -85 * C1 *3WFO - ? -
23 PsiBlast_CBE 67.6033% -80 - C1 -4X4W - TRNT1_HUMAN -
54 Fugue 66.4325% -67 - C1 -1OU5 - TRNT1_HUMAN -
34 HHSearch 66.1322% -78 - C1 -3WFP - ? -
25 PsiBlast_CBE 63.5933% -77 - C1 -3AQL 3.2 ?
22 PsiBlast_CBE 62.5634% -78 - C1 -3AQM - ? -
4 PsiBlast_PDB 62.5134% -80 - C1 -3AQM - ? -
7 PsiBlast_PDB 62.4933% -80 - C1 -3AQL - ? -
8 PsiBlast_PDB 62.2933% -80 - C1 -3AQN 4.0 ?
24 PsiBlast_CBE 62.1933% -79 - C1 -3AQN 4.1 ?
6 PsiBlast_PDB 62.0433% -68 - C1 -3AQK - ? -
5 PsiBlast_PDB 61.3733% -78 - C1 -1OU5 - TRNT1_HUMAN -
16 PsiBlast_PDB 58.2333% -57 - C1 -4WC5 4.8 ?
13 PsiBlast_PDB 57.6633% -57 - C1 -4WC2 4.6 ?
17 PsiBlast_PDB 57.6533% -57 - C1 -4WC6 4.6 ?
15 PsiBlast_PDB 57.5033% -56 - C1 -4WC4 4.5 ?
28 PsiBlast_CBE 57.3433% -59 - C1 -1VFG 4.6 ?
26 PsiBlast_CBE 57.2033% -57 - C1 -4WC1 3.4 ?
18 PsiBlast_PDB 56.8133% -54 - C1 -4WC7 4.0 ?
12 PsiBlast_PDB 56.6033% -53 - C1 -4WC1 3.7 ?
27 PsiBlast_CBE 56.3133% -55 - C1 -4WC0 4.8 ?
11 PsiBlast_PDB 56.2533% -59 - C1 -4WC0 4.7 ?
9 PsiBlast_PDB 56.0733% -59 - C1 -1VFG 5.0 ?